HL_4V54_100

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V54|1|BB|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_100 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1102

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V54|1|BB|C|2745
4V54|1|BB|U|2746
4V54|1|BB|G|2747
4V54|1|BB|A|2748
4V54|1|BB|A|2749
4V54|1|BB|A|2750
4V54|1|BB|G|2751
4V54|1|BB|C|2752
4V54|1|BB|A|2753
4V54|1|BB|U|2754
4V54|1|BB|C|2755
4V54|1|BB|U|2756
4V54|1|BB|A|2757
4V54|1|BB|A|2758
4V54|1|BB|G|2759

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6