HL_4V55_082

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V55|1|BB|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_082 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2281

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V55|1|BB|G|1910
4V55|1|BB|U|1911
4V55|1|BB|A|1912
4V55|1|BB|A|1913
4V55|1|BB|C|1914
4V55|1|BB|U|1915
4V55|1|BB|A|1916
4V55|1|BB|U|1917
4V55|1|BB|A|1918
4V55|1|BB|A|1919
4V55|1|BB|C|1920

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

50S ribosomal protein RRF