HL_4V55_084

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V55|1|BB|A|2030, 4V55|1|BB|A|2031, 4V55|1|BB|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_084 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1433

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4V55|1|BB|G|2027
4V55|1|BB|U|2028
4V55|1|BB|G|2029
4V55|1|BB|A|2030
4V55|1|BB|A|2031
4V55|1|BB|G|2032
4V55|1|BB|A|2033
4V55|1|BB|U|2034
4V55|1|BB|G|2035
4V55|1|BB|C|2036

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BR

50S ribosomal protein L21