HL_4V55_200

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_200 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.1152

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V55|1|DB|C|2594
4V55|1|DB|G|2595
4V55|1|DB|U|2596
4V55|1|DB|G|2597
4V55|1|DB|A|2598
4V55|1|DB|G|2599

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D6

50S ribosomal protein RRF

Chain DC

50S ribosomal protein L2