HL_4V56_047

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V56|1|BB|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_047 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1047

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V56|1|BB|G|410
4V56|1|BB|G|411
4V56|1|BB|A|412
4V56|1|BB|C|413
4V56|1|BB|C|414
4V56|1|BB|A|415
4V56|1|BB|U|416
4V56|1|BB|C|417

Current chains

Chain BB

23S rRNA

Nearby chains