HL_4V56_050

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V56|1|BB|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_050 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.416

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V56|1|BB|G|543
4V56|1|BB|C|544
4V56|1|BB|U|545
4V56|1|BB|U|546
4V56|1|BB|A|547
4V56|1|BB|G|548
4V56|1|BB|G|549
4V56|1|BB|C|550

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21