HL_4V56_085

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_085 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5516

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

4V56|1|BB|A|2142
4V56|1|BB|C|2143
4V56|1|BB|G|2144
4V56|1|BB|C|2145
4V56|1|BB|C|2146
4V56|1|BB|A|2147
4V56|1|BB|G|2148
4V56|1|BB|U|2149

Current chains

Chain BB

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA