HL_4V56_086

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

4V56|1|BB|A|2211, 4V56|1|BB|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_086 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.2785

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

4V56|1|BB|G|2209
4V56|1|BB|U|2210
4V56|1|BB|A|2211
4V56|1|BB|A|2212
4V56|1|BB|U|2213
4V56|1|BB|C|2214
4V56|1|BB|C|2215

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2