HL_4V56_175

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V56|1|DB|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_175 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.1722

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V56|1|DB|C|1533
4V56|1|DB|U|1534
4V56|1|DB|A|1535
4V56|1|DB|C|1536
4V56|1|DB|G|1537
4V56|1|DB|G|1538

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23