HL_4V57_014

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.1116

The information below is about HL_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_26881.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

8

Unit IDs

4V57|1|AA|G|617
4V57|1|AA|C|618
4V57|1|AA|U|619
4V57|1|AA|C|620
4V57|1|AA|A|621
4V57|1|AA|A|622
4V57|1|AA|C|623

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16