HL_4V57_021

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases (A, C, G, U)

971G

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1569

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|AA|G|963
4V57|1|AA|A|964
4V57|1|AA|U|965
4V57|1|AA|G|966
4V57|1|AA|C|967
4V57|1|AA|A|968
4V57|1|AA|A|969
4V57|1|AA|C|970
4V57|1|AA|G|971
4V57|1|AA|C|972

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AM

30S ribosomal protein S13