HL_4V57_041

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_041 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.103

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V57|1|BB|C|225
4V57|1|BB|A|226
4V57|1|BB|A|227
4V57|1|BB|C|228
4V57|1|BB|C|229
4V57|1|BB|G|230

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15