HL_4V57_049

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

4V57|1|BB|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_049 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1218

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V57|1|BB|C|487
4V57|1|BB|G|488
4V57|1|BB|G|489
4V57|1|BB|C|490
4V57|1|BB|G|491
4V57|1|BB|A|492
4V57|1|BB|G|493

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22