HL_4V57_070

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

4V57|1|BB|A|1453, 4V57|1|BB|C|1454, 4V57|1|BB|U|1458, 4V57|1|BB|G|1459, 4V57|1|BB|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_070 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3458

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V57|1|BB|G|1449
4V57|1|BB|G|1450
4V57|1|BB|C|1451
4V57|1|BB|G|1452
4V57|1|BB|A|1453
4V57|1|BB|C|1454
4V57|1|BB|G|1455
4V57|1|BB|G|1456
4V57|1|BB|U|1457
4V57|1|BB|U|1458
4V57|1|BB|G|1459
4V57|1|BB|U|1460
4V57|1|BB|C|1461
4V57|1|BB|C|1462

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L17