HL_4V57_089

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_089 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.4654

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V57|1|BB|G|2303
4V57|1|BB|G|2304
4V57|1|BB|U|2305
4V57|1|BB|C|2306
4V57|1|BB|G|2307
4V57|1|BB|G|2308
4V57|1|BB|A|2309
4V57|1|BB|C|2310
4V57|1|BB|A|2311
4V57|1|BB|U|2312
4V57|1|BB|C|2313

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5