HL_4V57_109

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V57|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_109 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1219

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V57|1|CA|G|259
4V57|1|CA|G|260
4V57|1|CA|U|261
4V57|1|CA|A|262
4V57|1|CA|A|263
4V57|1|CA|C|264
4V57|1|CA|G|265
4V57|1|CA|G|266
4V57|1|CA|C|267

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20