HL_4V57_126

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V57|1|CA|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_126 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.3477

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V57|1|CA|C|1028
4V57|1|CA|U|1029
4V57|1|CA|U|1030
4V57|1|CA|C|1031
4V57|1|CA|G|1032
4V57|1|CA|G|1033

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA