HL_4V57_153

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V57|1|DB|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_153 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3587

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V57|1|DB|G|543
4V57|1|DB|C|544
4V57|1|DB|U|545
4V57|1|DB|U|546
4V57|1|DB|A|547
4V57|1|DB|G|548
4V57|1|DB|G|549
4V57|1|DB|C|550

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21