HL_4V57_165

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V57|1|DB|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_165 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1127

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V57|1|DB|C|1064
4V57|1|DB|U|1065
4V57|1|DB|U|1066
4V57|1|DB|A|1067
4V57|1|DB|G|1068
4V57|1|DB|A|1069
4V57|1|DB|A|1070
4V57|1|DB|G|1071
4V57|1|DB|C|1072
4V57|1|DB|A|1073
4V57|1|DB|G|1074

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DI

50S ribosomal protein L11