HL_4V57_188

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V57|1|DB|C|2145, 4V57|1|DB|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_188 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2351

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V57|1|DB|A|2142
4V57|1|DB|C|2143
4V57|1|DB|G|2144
4V57|1|DB|C|2145
4V57|1|DB|C|2146
4V57|1|DB|A|2147
4V57|1|DB|G|2148
4V57|1|DB|U|2149

Current chains

Chain DB

23S rRNA

Nearby chains