HL_4V57_189

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases (A, C, G, U)

2211A, 2213U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_189 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.3109

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16845.7

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V57|1|DB|G|2209
4V57|1|DB|U|2210
4V57|1|DB|A|2211
4V57|1|DB|A|2212
4V57|1|DB|U|2213
4V57|1|DB|C|2214
4V57|1|DB|C|2215

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2