HL_4V57_191

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V57|1|DB|A|2268, 4V57|1|DB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_191 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.285

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.8

Basepair signature

cWW-tSH-tHH-tWW-F

Number of instances in this motif group

8

Unit IDs

4V57|1|DB|C|2264
4V57|1|DB|U|2265
4V57|1|DB|A|2266
4V57|1|DB|A|2267
4V57|1|DB|A|2268
4V57|1|DB|G|2269
4V57|1|DB|A|2270
4V57|1|DB|G|2271
4V57|1|DB|U|2272
4V57|1|DB|A|2273
4V57|1|DB|A|2274
4V57|1|DB|C|2275
4V57|1|DB|G|2276

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27