HL_4V57_194

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_194 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0702

The information below is about HL_5J7L_190

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_87030.3

Basepair signature

cWW-F-F

Number of instances in this motif group

30

Unit IDs

4V57|1|DB|U|2356
4V57|1|DB|G|2357
4V57|1|DB|A|2358
4V57|1|DB|C|2359
4V57|1|DB|G|2360
4V57|1|DB|G|2361

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15

Chain DW

50S ribosomal protein L27