HL_4V5A_004

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

4V5A|1|AA|U|189|||F, 4V5A|1|AA|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_004 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1747

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V5A|1|AA|C|189|||C
4V5A|1|AA|C|189|||D
4V5A|1|AA|U|189|||E
4V5A|1|AA|U|189|||F
4V5A|1|AA|G|189|||G
4V5A|1|AA|G|189|||H

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain AT

30S RIBOSOMAL PROTEIN S20