4V5A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V5A_001 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_4V5A_002 | 1/AA/77:92 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_4V5A_263 | 1/AA/156:165 | No text annotation | ||
| HL_4V5A_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_4V5A_004 | 1/AA/189C:189H | No text annotation | homologous HL_4LFB_004 HL_89167.2 | |
| HL_4V5A_005 | 1/AA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_90436.3 | |
| HL_4V5A_006 | 1/AA/259:267 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_4V5A_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.3 | |
| HL_4V5A_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V5A_009 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V5A_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.3 | |
| HL_4V5A_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.3 | |
| HL_4V5A_012 | 1/AA/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.3 | |
| HL_4V5A_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V5A_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_4V5A_015 | 1/AA/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_4V5A_016 | 1/AA/725:732 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.2 | |
| HL_4V5A_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_4V5A_018 | 1/AA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V5A_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.3 | |
| HL_4V5A_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.3 | |
| HL_4V5A_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V5A_218 | 1/AA/1011:1019 | No text annotation | homologous HL_6CZR_093 NA | |
| HL_4V5A_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.3 | |
| HL_4V5A_023 | 1/AA/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
| HL_4V5A_024 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_4V5A_025 | 1/AA/1124:1149 | No text annotation | ||
| HL_4V5A_264 | 1/AA/1163:1173 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_4V5A_026 | 1/AA/1165:1171 | GNRA | geometric HL_5XTM_001 HL_34789.3 | |
| HL_4V5A_027 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.3 | |
| HL_4V5A_028 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V5A_265 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V5A_030 | 1/AA/1445:1457 | UNCG | geometric HL_5J7L_030 NA | |
| HL_4V5A_222 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.3 | |
| HL_4V5A_032 | 1/AV/30:38 | tRNA anticodon loop | ||
| HL_4V5A_034 | 1/AW/31:41 | No text annotation | homologous HL_5IB8_208 HL_14063.2 | |
| HL_4V5A_036 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V5A_224 | 1/BA/87:95 | No text annotation | ||
| HL_4V5A_038 | 1/BA/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_4V5A_039 | 1/BA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V5A_040 | 1/BA/154:172 | No text annotation | homologous HL_7RQB_005 NA | |
| HL_4V5A_041 | 1/BA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V5A_042 | 1/BA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V5A_043 | 1/BA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V5A_044 | 1/BA/271H:271P | No text annotation | ||
| HL_4V5A_045 | 1/BA/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.3 | |
| HL_4V5A_046 | 1/BA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.7 | |
| HL_4V5A_047 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_4V5A_048 | 1/BA/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4V5A_049 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V5A_050 | 1/BA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V5A_227 | 1/BA/487:493 | GNRA | homologous HL_4WF9_016 HL_34789.3 | |
| HL_4V5A_052 | 1/BA/542:551 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_4V5A_053 | 1/BA/564:577 | No text annotation | ||
| HL_4V5A_054 | 1/BA/612:615 | No text annotation | homologous HL_7A0S_019 HL_59381.2 | |
| HL_4V5A_055 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V5A_228 | 1/BA/641:647 | GNRA | homologous HL_9DFE_019 HL_34789.3 | |
| HL_4V5A_057 | 1/BA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V5A_058 | 1/BA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V5A_059 | 1/BA/779:785 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_4V5A_060 | 1/BA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V5A_229 | 1/BA/877:899 | No text annotation | ||
| HL_4V5A_062 | 1/BA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V5A_063 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V5A_266 | 1/BA/1042:1113 | No text annotation | ||
| HL_4V5A_267 | 1/BA/1170:1179 | No text annotation | ||
| HL_4V5A_066 | 1/BA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V5A_231 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_031 HL_33597.3 | |
| HL_4V5A_068 | 1/BA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V5A_069 | 1/BA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4V5A_070 | 1/BA/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_4V5A_071 | 1/BA/1450A:1461 | No text annotation | ||
| HL_4V5A_072 | 1/BA/1492:1498 | No text annotation | ||
| HL_4V5A_073 | 1/BA/1526:1546 | No text annotation | ||
| HL_4V5A_074 | 1/BA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_4V5A_075 | 1/BA/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_4V5A_234 | 1/BA/1630:1636 | No text annotation | homologous HL_7A0S_041 NA | |
| HL_4V5A_076 | 1/BA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V5A_077 | 1/BA/1691:1696 | UNCG | geometric HL_4LFB_011 HL_61337.3 | |
| HL_4V5A_078 | 1/BA/1717:1745 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
| HL_4V5A_079 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V5A_080 | 1/BA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V5A_081 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V5A_082 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V5A_083 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V5A_084 | 1/BA/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_4V5A_085 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V5A_087 | 1/BA/2205:2219 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_4V5A_088 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V5A_089 | 1/BA/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_4V5A_090 | 1/BA/2303:2313 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V5A_091 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V5A_092 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V5A_093 | 1/BA/2374:2379 | GNRA | homologous HL_7A0S_057 HL_34789.3 | |
| HL_4V5A_094 | 1/BA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V5A_095 | 1/BA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_4V5A_096 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V5A_097 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V5A_098 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V5A_099 | 1/BA/2652:2668 | No text annotation | ||
| HL_4V5A_100 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V5A_101 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V5A_103 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V5A_104 | 1/BA/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_4V5A_236 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4V5A_105 | 1/BB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V5A_107 | 1/CA/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_4V5A_268 | 1/CA/156:165 | No text annotation | ||
| HL_4V5A_109 | 1/CA/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_4V5A_110 | 1/CA/189C:189H | No text annotation | homologous HL_4LFB_004 HL_89167.2 | |
| HL_4V5A_111 | 1/CA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_90436.3 | |
| HL_4V5A_112 | 1/CA/259:267 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_4V5A_113 | 1/CA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.3 | |
| HL_4V5A_114 | 1/CA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V5A_115 | 1/CA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V5A_116 | 1/CA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.3 | |
| HL_4V5A_117 | 1/CA/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.3 | |
| HL_4V5A_118 | 1/CA/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.3 | |
| HL_4V5A_119 | 1/CA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V5A_120 | 1/CA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_4V5A_121 | 1/CA/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_4V5A_122 | 1/CA/725:732 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.2 | |
| HL_4V5A_123 | 1/CA/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_4V5A_124 | 1/CA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V5A_125 | 1/CA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.3 | |
| HL_4V5A_126 | 1/CA/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.3 | |
| HL_4V5A_127 | 1/CA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V5A_244 | 1/CA/1011:1019 | No text annotation | homologous HL_6CZR_093 NA | |
| HL_4V5A_128 | 1/CA/1012:1017 | GNRA | geometric HL_4LFB_022 HL_34789.3 | |
| HL_4V5A_129 | 1/CA/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
| HL_4V5A_130 | 1/CA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_4V5A_131 | 1/CA/1124:1149 | No text annotation | ||
| HL_4V5A_269 | 1/CA/1163:1173 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_4V5A_132 | 1/CA/1165:1171 | GNRA | geometric HL_5XTM_001 HL_34789.3 | |
| HL_4V5A_133 | 1/CA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.3 | |
| HL_4V5A_134 | 1/CA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V5A_270 | 1/CA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V5A_136 | 1/CA/1445:1457 | UNCG | homologous HL_5J7L_030 NA | |
| HL_4V5A_137 | 1/CA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.3 | |
| HL_4V5A_138 | 1/CV/30:38 | tRNA anticodon loop | ||
| HL_4V5A_142 | 1/DA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V5A_249 | 1/DA/87:95 | No text annotation | ||
| HL_4V5A_144 | 1/DA/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_4V5A_145 | 1/DA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V5A_146 | 1/DA/154:172 | No text annotation | homologous HL_7RQB_005 NA | |
| HL_4V5A_147 | 1/DA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V5A_148 | 1/DA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V5A_149 | 1/DA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V5A_151 | 1/DA/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.3 | |
| HL_4V5A_152 | 1/DA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.7 | |
| HL_4V5A_153 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_4V5A_154 | 1/DA/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4V5A_155 | 1/DA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V5A_156 | 1/DA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V5A_252 | 1/DA/487:493 | GNRA | homologous HL_4WF9_016 HL_34789.3 | |
| HL_4V5A_158 | 1/DA/542:551 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_4V5A_159 | 1/DA/564:577 | No text annotation | ||
| HL_4V5A_160 | 1/DA/612:615 | No text annotation | homologous HL_7A0S_019 HL_59381.2 | |
| HL_4V5A_161 | 1/DA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V5A_253 | 1/DA/641:647 | GNRA | homologous HL_9DFE_019 HL_34789.3 | |
| HL_4V5A_163 | 1/DA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V5A_164 | 1/DA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V5A_165 | 1/DA/779:785 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_4V5A_166 | 1/DA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V5A_168 | 1/DA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V5A_169 | 1/DA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V5A_272 | 1/DA/1042:1113 | No text annotation | ||
| HL_4V5A_273 | 1/DA/1170:1179 | No text annotation | ||
| HL_4V5A_172 | 1/DA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V5A_256 | 1/DA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_031 HL_33597.3 | |
| HL_4V5A_174 | 1/DA/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_7A0S_033 HL_49081.1 | |
| HL_4V5A_175 | 1/DA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4V5A_176 | 1/DA/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_4V5A_177 | 1/DA/1450A:1461 | No text annotation | ||
| HL_4V5A_178 | 1/DA/1492:1498 | No text annotation | ||
| HL_4V5A_179 | 1/DA/1526:1546 | No text annotation | ||
| HL_4V5A_180 | 1/DA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_4V5A_181 | 1/DA/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_4V5A_259 | 1/DA/1630:1636 | No text annotation | homologous HL_7A0S_041 NA | |
| HL_4V5A_182 | 1/DA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V5A_183 | 1/DA/1691:1696 | UNCG | homologous HL_5J7L_175 NA | |
| HL_4V5A_184 | 1/DA/1717:1745 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
| HL_4V5A_185 | 1/DA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V5A_186 | 1/DA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V5A_187 | 1/DA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V5A_189 | 1/DA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V5A_190 | 1/DA/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_4V5A_191 | 1/DA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V5A_193 | 1/DA/2205:2219 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_4V5A_194 | 1/DA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V5A_195 | 1/DA/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_4V5A_196 | 1/DA/2303:2313 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V5A_197 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V5A_198 | 1/DA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V5A_199 | 1/DA/2374:2379 | GNRA | homologous HL_7A0S_057 HL_34789.3 | |
| HL_4V5A_200 | 1/DA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V5A_201 | 1/DA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_4V5A_202 | 1/DA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V5A_203 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V5A_204 | 1/DA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V5A_205 | 1/DA/2652:2668 | No text annotation | ||
| HL_4V5A_206 | 1/DA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V5A_207 | 1/DA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V5A_208 | 1/DA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V5A_209 | 1/DA/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_4V5A_261 | 1/DB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4V5A_210 | 1/DB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V5A_211 | 1/DB/86:91 | GNRA | geometric HL_7A0S_070 HL_34789.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5A_212 | No text annotation | ||
| HL_4V5A_213 | No text annotation | ||
| HL_4V5A_214 | tRNA anticodon loop | ||
| HL_4V5A_215 | No text annotation | ||
| HL_4V5A_216 | No text annotation | ||
| HL_4V5A_217 | No text annotation | ||
| HL_4V5A_219 | No text annotation | ||
| HL_4V5A_220 | No text annotation | ||
| HL_4V5A_221 | No text annotation | ||
| HL_4V5A_029 | No text annotation | ||
| HL_4V5A_031 | No text annotation | ||
| HL_4V5A_223 | No text annotation | ||
| HL_4V5A_033 | No text annotation | ||
| HL_4V5A_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V5A_037 | No text annotation | ||
| HL_4V5A_225 | No text annotation | ||
| HL_4V5A_226 | GNRA with extra near cWW | ||
| HL_4V5A_051 | GNRA with extra cWW | ||
| HL_4V5A_056 | Anticodon loop related | ||
| HL_4V5A_061 | No text annotation | ||
| HL_4V5A_064 | No text annotation | ||
| HL_4V5A_065 | No text annotation | ||
| HL_4V5A_230 | No text annotation | ||
| HL_4V5A_067 | No text annotation | ||
| HL_4V5A_232 | No text annotation | ||
| HL_4V5A_233 | No text annotation | ||
| HL_4V5A_086 | No text annotation | ||
| HL_4V5A_235 | No text annotation | ||
| HL_4V5A_102 | No text annotation | ||
| HL_4V5A_237 | tRNA anticodon loop | ||
| HL_4V5A_106 | GNRA | ||
| HL_4V5A_238 | No text annotation | ||
| HL_4V5A_108 | No text annotation | ||
| HL_4V5A_239 | No text annotation | ||
| HL_4V5A_240 | tRNA anticodon loop | ||
| HL_4V5A_241 | No text annotation | ||
| HL_4V5A_242 | No text annotation | ||
| HL_4V5A_243 | No text annotation | ||
| HL_4V5A_245 | No text annotation | ||
| HL_4V5A_246 | No text annotation | ||
| HL_4V5A_247 | No text annotation | ||
| HL_4V5A_135 | No text annotation | ||
| HL_4V5A_139 | tRNA D-loop | ||
| HL_4V5A_248 | No text annotation | ||
| HL_4V5A_140 | No text annotation | ||
| HL_4V5A_271 | tRNA anticodon loop | ||
| HL_4V5A_141 | T-loop with 2 stacked bulged bases | ||
| HL_4V5A_143 | No text annotation | ||
| HL_4V5A_250 | No text annotation | ||
| HL_4V5A_150 | No text annotation | ||
| HL_4V5A_251 | GNRA with extra near cWW | ||
| HL_4V5A_157 | GNRA with extra cWW | ||
| HL_4V5A_162 | Anticodon loop related | ||
| HL_4V5A_254 | No text annotation | ||
| HL_4V5A_167 | No text annotation | ||
| HL_4V5A_170 | No text annotation | ||
| HL_4V5A_171 | No text annotation | ||
| HL_4V5A_255 | No text annotation | ||
| HL_4V5A_173 | No text annotation | ||
| HL_4V5A_257 | No text annotation | ||
| HL_4V5A_258 | No text annotation | ||
| HL_4V5A_188 | GNRA | ||
| HL_4V5A_192 | No text annotation | ||
| HL_4V5A_260 | No text annotation | ||
| HL_4V5A_262 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V5A_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.2 | |
| IL_4V5A_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_4V5A_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_4V5A_004 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V5A_005 | 1/AA/67:69, 1/AA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.3 | |
| IL_4V5A_006 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4V5A_007 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_4V5A_008 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4V5A_009 | 1/AA/186:188, 1/AA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.3 | |
| IL_4V5A_322 | 1/AA/186:189, 1/AA/189:191 | No text annotation | ||
| IL_4V5A_010 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4V5A_393 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V5A_012 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4V5A_013 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.3 | |
| IL_4V5A_014 | 1/AA/371:375, 1/AA/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_4V5A_015 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_4V5A_016 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V5A_394 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_4V5A_325 | 1/AA/450:455, 1/AA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V5A_019 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_4V5A_020 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V5A_021 | 1/AA/569:575, 1/AA/880:881 | No text annotation | geometric IL_4LFB_022 IL_20847.1 | |
| IL_4V5A_022 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_4V5A_023 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_4V5A_024 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_4V5A_025 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4V5A_026 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_4V5A_027 | 1/AA/656:658, 1/AA/747:750 | No text annotation | ||
| IL_4V5A_028 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_4V5A_328 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4V5A_030 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V5A_031 | 1/AA/773:778, 1/AA/804:806 | No text annotation | ||
| IL_4V5A_032 | 1/AA/779:784, 1/AA/798:803 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_35186.2 | |
| IL_4V5A_033 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4V5A_034 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_4V5A_035 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_4V5A_036 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation | homologous IL_6CZR_149 NA | |
| IL_4V5A_395 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_4V5A_038 | 1/AA/993:1002, 1/AA/1039:1045 | No text annotation | ||
| IL_4V5A_332 | 1/AA/993:1007, 1/AA/1022:1045 | No text annotation | ||
| IL_4V5A_039 | 1/AA/1002:1007, 1/AA/1022:1039 | No text annotation | ||
| IL_4V5A_041 | 1/AA/1011:1012, 1/AA/1017:1019 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4V5A_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_4V5A_334 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V5A_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4V5A_045 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_4V5A_046 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.3 | |
| IL_4V5A_047 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation | ||
| IL_4V5A_048 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4V5A_049 | 1/AA/1254:1259, 1/AA/1276:1283 | No text annotation | ||
| IL_4V5A_336 | 1/AA/1254:1262, 1/AA/1273:1283 | No text annotation | ||
| IL_4V5A_050 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_4V5A_051 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_4V5A_052 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_4V5A_053 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V5A_054 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.3 | |
| IL_4V5A_055 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4V5A_056 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_01003.3 | |
| IL_4V5A_057 | 1/AA/1416:1421, 1/AA/1479:1484 | No text annotation | ||
| IL_4V5A_058 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.7 | |
| IL_4V5A_059 | 1/AA/1435:1437, 1/AA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4M6D_011 IL_01003.3 | |
| IL_4V5A_060 | 1/AA/1440:1445, 1/AA/1457:1461 | No text annotation | ||
| IL_4V5A_061 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_4V5A_062 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V5A_063 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V5A_064 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V5A_065 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V5A_066 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V5A_338 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_02666.1 | |
| IL_4V5A_396 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_4V5A_397 | 1/BA/272I:279, 1/BA/361:363A | No text annotation | ||
| IL_4V5A_070 | 1/BA/280:290, 1/BA/350:360 | No text annotation | ||
| IL_4V5A_071 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V5A_072 | 1/BA/481:484, 1/BA/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_4V5A_073 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_4V5A_074 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.3 | |
| IL_4V5A_075 | 1/BA/674:679, 1/BA/798:806 | No text annotation | ||
| IL_4V5A_076 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V5A_077 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_4WF9_023 IL_28408.2 | |
| IL_4V5A_078 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V5A_079 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V5A_080 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_4WF9_027 IL_89509.1 | |
| IL_4V5A_081 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
| IL_4V5A_082 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V5A_083 | 1/BA/846:850, 1/BA/927:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V5A_084 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V5A_085 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_34520.3 | |
| IL_4V5A_086 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V5A_088 | 1/BA/875:877, 1/BA/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4V5A_089 | 1/BA/877:883, 1/BA/895:899 | No text annotation | ||
| IL_4V5A_090 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V5A_091 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4V5A_092 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_4V5A_093 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_4V5A_094 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_4V5A_095 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_4V5A_096 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V5A_097 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V5A_098 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_4V5A_343 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_9DFE_045 IL_68574.5 | |
| IL_4V5A_398 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_9DFE_046 IL_90775.2 | |
| IL_4V5A_101 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V5A_102 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V5A_422 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_9DFE_050 IL_63596.12 | |
| IL_4V5A_104 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V5A_105 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V5A_399 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_52564.1 | |
| IL_4V5A_107 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_4V5A_108 | 1/BA/1433:1435, 1/BA/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_38565.2 | |
| IL_4V5A_109 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V5A_111 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V5A_112 | 1/BA/1481:1484, 1/BA/1506:1510 | No text annotation | ||
| IL_4V5A_114 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V5A_115 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V5A_116 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V5A_117 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.2 | |
| IL_4V5A_348 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4V5A_118 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_28217.1 | |
| IL_4V5A_119 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V5A_120 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V5A_121 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V5A_122 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_55206.1 | |
| IL_4V5A_123 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V5A_124 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V5A_125 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4V5A_126 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V5A_127 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_4V5A_128 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_4V5A_129 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_4V5A_130 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V5A_131 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_34520.3 | |
| IL_4V5A_132 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V5A_133 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V5A_135 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_4V5A_136 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V5A_401 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation | ||
| IL_4V5A_138 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V5A_139 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V5A_140 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_4V5A_350 | 1/BA/2457:2461, 1/BA/2489:2494 | No text annotation | ||
| IL_4V5A_141 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V5A_143 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_4V5A_144 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_4V5A_145 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_4V5A_146 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.2 | |
| IL_4V5A_147 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V5A_351 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_4V5A_402 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_9DFE_103 IL_63596.12 | |
| IL_4V5A_150 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V5A_403 | 1/BA/2695:2696, 1/BA/2711:2714 | No text annotation | homologous IL_9DFE_105 IL_44609.2 | |
| IL_4V5A_152 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4V5A_353 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_05642.2 | |
| IL_4V5A_354 | 1/BA/2843:2845, 1/BA/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_4V5A_155 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V5A_156 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.2 | |
| IL_4V5A_157 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V5A_405 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_73108.2 | |
| IL_4V5A_159 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_4V5A_160 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V5A_161 | 1/CA/30:32, 1/CA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.2 | |
| IL_4V5A_162 | 1/CA/44:45, 1/CA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_4V5A_163 | 1/CA/47:52, 1/CA/359:361 | No text annotation | geometric IL_4LFB_003 IL_32983.2 | |
| IL_4V5A_164 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V5A_165 | 1/CA/67:69, 1/CA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.3 | |
| IL_4V5A_166 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4V5A_167 | 1/CA/132:136, 1/CA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_4V5A_168 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4V5A_169 | 1/CA/186:188, 1/CA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.3 | |
| IL_4V5A_170 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4V5A_407 | 1/CA/249:252, 1/CA/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V5A_172 | 1/CA/292:293, 1/CA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4V5A_173 | 1/CA/367:369, 1/CA/392:393 | Single bulged U | geometric IL_4LFB_014 IL_97561.3 | |
| IL_4V5A_174 | 1/CA/371:375, 1/CA/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_4V5A_175 | 1/CA/375:376, 1/CA/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_4V5A_176 | 1/CA/409:416, 1/CA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V5A_408 | 1/CA/446:450, 1/CA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_4V5A_361 | 1/CA/450:455, 1/CA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V5A_179 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_4V5A_180 | 1/CA/515:521, 1/CA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V5A_181 | 1/CA/569:575, 1/CA/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_4V5A_182 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_4V5A_183 | 1/CA/594:597, 1/CA/643:645 | No text annotation | homologous IL_6CZR_136 NA | |
| IL_4V5A_363 | 1/CA/594:598, 1/CA/640:645 | No text annotation | ||
| IL_4V5A_184 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop | geometric IL_4PDB_002 IL_73108.2 | |
| IL_4V5A_185 | 1/CA/605:612, 1/CA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4V5A_186 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.2 | |
| IL_4V5A_187 | 1/CA/656:658, 1/CA/747:750 | No text annotation | ||
| IL_4V5A_188 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_4V5A_364 | 1/CA/673:677, 1/CA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4V5A_190 | 1/CA/683:688, 1/CA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V5A_191 | 1/CA/773:778, 1/CA/804:806 | No text annotation | ||
| IL_4V5A_192 | 1/CA/779:784, 1/CA/798:803 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_35186.2 | |
| IL_4V5A_193 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4V5A_194 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_4V5A_195 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_4V5A_196 | 1/CA/933:936, 1/CA/1379:1384 | No text annotation | geometric IL_6CZR_149 NA | |
| IL_4V5A_409 | 1/CA/953:954, 1/CA/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_4V5A_198 | 1/CA/993:1002, 1/CA/1039:1045 | No text annotation | ||
| IL_4V5A_368 | 1/CA/993:1007, 1/CA/1022:1045 | No text annotation | ||
| IL_4V5A_199 | 1/CA/1002:1007, 1/CA/1022:1039 | No text annotation | ||
| IL_4V5A_369 | 1/CA/1007:1011, 1/CA/1019:1022 | No text annotation | geometric IL_4DB2_001 IL_61988.1 | |
| IL_4V5A_200 | 1/CA/1008:1011, 1/CA/1019:1021 | No text annotation | geometric IL_8C3A_004 NA | |
| IL_4V5A_201 | 1/CA/1011:1012, 1/CA/1017:1019 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4V5A_202 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_4V5A_370 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V5A_204 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4V5A_205 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_4V5A_206 | 1/CA/1061:1063, 1/CA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.3 | |
| IL_4V5A_207 | 1/CA/1158:1162, 1/CA/1174:1181 | No text annotation | ||
| IL_4V5A_208 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4V5A_209 | 1/CA/1254:1259, 1/CA/1276:1283 | No text annotation | ||
| IL_4V5A_372 | 1/CA/1254:1262, 1/CA/1273:1283 | No text annotation | ||
| IL_4V5A_210 | 1/CA/1259:1262, 1/CA/1273:1276 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_4V5A_211 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_4V5A_212 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_4V5A_213 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V5A_214 | 1/CA/1405:1407, 1/CA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.3 | |
| IL_4V5A_373 | 1/CA/1405:1409, 1/CA/1491:1496 | No text annotation | homologous IL_4LFB_058 NA | |
| IL_4V5A_215 | 1/CA/1407:1409, 1/CA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4V5A_216 | 1/CA/1412:1414, 1/CA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V5A_217 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V5A_218 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.7 | |
| IL_4V5A_410 | 1/CA/1435:1437, 1/CA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.3 | |
| IL_4V5A_220 | 1/CA/1440:1443, 1/CA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_34117.1 | |
| IL_4V5A_221 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_4V5A_222 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V5A_223 | 1/DA/42:43, 1/DA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V5A_224 | 1/DA/81:85, 1/DA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V5A_225 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V5A_226 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V5A_377 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_02666.1 | |
| IL_4V5A_411 | 1/DA/272D:272E, 1/DA/363E:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_4V5A_412 | 1/DA/272I:279, 1/DA/361:363A | No text annotation | ||
| IL_4V5A_230 | 1/DA/280:290, 1/DA/350:360 | No text annotation | ||
| IL_4V5A_231 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V5A_232 | 1/DA/481:484, 1/DA/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_4V5A_233 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_4V5A_234 | 1/DA/672:674, 1/DA/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.3 | |
| IL_4V5A_235 | 1/DA/674:679, 1/DA/798:806 | No text annotation | ||
| IL_4V5A_236 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V5A_237 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | homologous IL_4WF9_023 IL_28408.2 | |
| IL_4V5A_238 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V5A_239 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V5A_240 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | geometric IL_4WF9_027 IL_89509.1 | |
| IL_4V5A_241 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
| IL_4V5A_242 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V5A_243 | 1/DA/846:850, 1/DA/927:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V5A_244 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V5A_245 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_34520.3 | |
| IL_4V5A_246 | 1/DA/864:868, 1/DA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V5A_248 | 1/DA/875:877, 1/DA/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4V5A_250 | 1/DA/952:954, 1/DA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V5A_251 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4V5A_252 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_4V5A_253 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_4V5A_254 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_4V5A_255 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_4V5A_256 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V5A_257 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V5A_258 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_4V5A_259 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V5A_413 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_9DFE_046 IL_90775.2 | |
| IL_4V5A_261 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V5A_262 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V5A_423 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_9DFE_050 IL_63596.12 | |
| IL_4V5A_264 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V5A_265 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V5A_267 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_4V5A_268 | 1/DA/1433:1435, 1/DA/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_38565.2 | |
| IL_4V5A_269 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V5A_271 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V5A_272 | 1/DA/1481:1484, 1/DA/1506:1510 | No text annotation | ||
| IL_4V5A_274 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V5A_275 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V5A_276 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V5A_277 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.2 | |
| IL_4V5A_385 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4V5A_278 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V5A_279 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V5A_280 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V5A_281 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V5A_282 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_55206.1 | |
| IL_4V5A_283 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V5A_284 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V5A_285 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4V5A_286 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V5A_287 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_4V5A_288 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_4V5A_289 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_4V5A_290 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V5A_291 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V5A_292 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V5A_293 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V5A_294 | 1/DA/2107:2110, 1/DA/2179:2182 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_4V5A_295 | 1/DA/2110:2120, 1/DA/2178:2179 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_4V5A_296 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V5A_416 | 1/DA/2401:2403, 1/DA/2414:2415 | No text annotation | ||
| IL_4V5A_298 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4V5A_299 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_4V5A_300 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_4V5A_387 | 1/DA/2457:2461, 1/DA/2489:2494 | No text annotation | ||
| IL_4V5A_301 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V5A_302 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V5A_303 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_4V5A_304 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 NA | |
| IL_4V5A_305 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_4V5A_306 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.2 | |
| IL_4V5A_307 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V5A_388 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_4V5A_417 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_9DFE_103 IL_63596.12 | |
| IL_4V5A_310 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V5A_418 | 1/DA/2695:2696, 1/DA/2711:2714 | No text annotation | homologous IL_9DFE_105 IL_44609.2 | |
| IL_4V5A_312 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4V5A_389 | 1/DA/2838:2839, 1/DA/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_05642.2 | |
| IL_4V5A_390 | 1/DA/2843:2845, 1/DA/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_4V5A_315 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V5A_316 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.2 | |
| IL_4V5A_317 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V5A_420 | 1/DB/30:31, 1/DB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_73108.2 | |
| IL_4V5A_319 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_4V5A_320 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V5A_321 | Isolated non-canonical cWW pair | ||
| IL_4V5A_323 | No text annotation | ||
| IL_4V5A_011 | No text annotation | ||
| IL_4V5A_324 | No text annotation | ||
| IL_4V5A_017 | No text annotation | ||
| IL_4V5A_018 | No text annotation | ||
| IL_4V5A_326 | No text annotation | ||
| IL_4V5A_327 | Major groove minor groove platform with extra cWW | ||
| IL_4V5A_029 | No text annotation | ||
| IL_4V5A_329 | Kink-turn | ||
| IL_4V5A_330 | No text annotation | ||
| IL_4V5A_331 | Isolated non-canonical cWW pair | ||
| IL_4V5A_037 | Minor groove platform with extra cWW | ||
| IL_4V5A_333 | No text annotation | ||
| IL_4V5A_040 | No text annotation | ||
| IL_4V5A_043 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_335 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_337 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_067 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V5A_339 | No text annotation | ||
| IL_4V5A_068 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_069 | No text annotation | ||
| IL_4V5A_340 | No text annotation | ||
| IL_4V5A_341 | No text annotation | ||
| IL_4V5A_087 | Isolated cWS basepair | ||
| IL_4V5A_342 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_099 | tSH-tHH-tHS | ||
| IL_4V5A_100 | Kink-turn | ||
| IL_4V5A_344 | No text annotation | ||
| IL_4V5A_103 | No text annotation | ||
| IL_4V5A_106 | No text annotation | ||
| IL_4V5A_110 | Single stack bend | ||
| IL_4V5A_345 | No text annotation | ||
| IL_4V5A_400 | No text annotation | ||
| IL_4V5A_113 | No text annotation | ||
| IL_4V5A_346 | No text annotation | ||
| IL_4V5A_347 | No text annotation | ||
| IL_4V5A_134 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_349 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_137 | No text annotation | ||
| IL_4V5A_142 | Triple sheared | ||
| IL_4V5A_148 | No text annotation | ||
| IL_4V5A_149 | No text annotation | ||
| IL_4V5A_352 | No text annotation | ||
| IL_4V5A_151 | No text annotation | ||
| IL_4V5A_153 | Single bulged G, near cWW | ||
| IL_4V5A_154 | No text annotation | ||
| IL_4V5A_404 | Isolated cWH basepair | ||
| IL_4V5A_355 | No text annotation | ||
| IL_4V5A_158 | No text annotation | ||
| IL_4V5A_406 | Isolated non-canonical cWW pair | ||
| IL_4V5A_356 | No text annotation | ||
| IL_4V5A_357 | Isolated non-canonical cWW pair | ||
| IL_4V5A_358 | No text annotation | ||
| IL_4V5A_359 | No text annotation | ||
| IL_4V5A_171 | No text annotation | ||
| IL_4V5A_360 | No text annotation | ||
| IL_4V5A_177 | No text annotation | ||
| IL_4V5A_178 | No text annotation | ||
| IL_4V5A_362 | No text annotation | ||
| IL_4V5A_189 | No text annotation | ||
| IL_4V5A_365 | Kink-turn | ||
| IL_4V5A_366 | No text annotation | ||
| IL_4V5A_367 | Isolated non-canonical cWW pair | ||
| IL_4V5A_197 | Minor groove platform with extra cWW | ||
| IL_4V5A_203 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_371 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_374 | No text annotation | ||
| IL_4V5A_219 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_375 | Triple non-canonical cWW pairs | ||
| IL_4V5A_376 | No text annotation | ||
| IL_4V5A_227 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V5A_378 | Isolated non-canonical cWW with bulges | ||
| IL_4V5A_228 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_229 | No text annotation | ||
| IL_4V5A_379 | No text annotation | ||
| IL_4V5A_380 | No text annotation | ||
| IL_4V5A_247 | Isolated cWS basepair | ||
| IL_4V5A_249 | No text annotation | ||
| IL_4V5A_381 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_260 | Kink-turn | ||
| IL_4V5A_263 | No text annotation | ||
| IL_4V5A_266 | No text annotation | ||
| IL_4V5A_414 | No text annotation | ||
| IL_4V5A_270 | Single stack bend | ||
| IL_4V5A_382 | No text annotation | ||
| IL_4V5A_415 | No text annotation | ||
| IL_4V5A_273 | No text annotation | ||
| IL_4V5A_383 | No text annotation | ||
| IL_4V5A_384 | No text annotation | ||
| IL_4V5A_386 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_297 | No text annotation | ||
| IL_4V5A_308 | No text annotation | ||
| IL_4V5A_309 | No text annotation | ||
| IL_4V5A_311 | No text annotation | ||
| IL_4V5A_313 | Single bulged G, near cWW | ||
| IL_4V5A_314 | No text annotation | ||
| IL_4V5A_419 | Isolated cWH basepair | ||
| IL_4V5A_391 | No text annotation | ||
| IL_4V5A_318 | No text annotation | ||
| IL_4V5A_421 | Isolated non-canonical cWW pair | ||
| IL_4V5A_392 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V5A_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_4V5A_051 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4V5A_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_6CZR_016 NA | |
| J3_4V5A_052 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4V5A_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V5A_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | geometric J3_4LFB_001 J3_02285.1 | |
| J3_4V5A_054 | 1/AA/933:939, 1/AA/1344:1350, 1/AA/1372:1384 | No text annotation | ||
| J3_4V5A_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4V5A_006 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation | ||
| J3_4V5A_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4V5A_008 | 1/AA/990:993, 1/AA/1045:1048, 1/AA/1209:1215 | No text annotation | ||
| J3_4V5A_055 | 1/AA/990:993, 1/AA/1045:1050, 1/AA/1208:1215 | No text annotation | ||
| J3_4V5A_056 | 1/AA/990:1007, 1/AA/1022:1050, 1/AA/1208:1215 | No text annotation | ||
| J3_4V5A_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4V5A_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_5J7L_009 NA | |
| J3_4V5A_011 | 1/AA/1115:1118, 1/AA/1155:1158, 1/AA/1181:1185 | No text annotation | ||
| J3_4V5A_058 | 1/AA/1116:1118, 1/AA/1155:1162, 1/AA/1174:1184 | No text annotation | ||
| J3_4V5A_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_4V5A_059 | 1/AA/1237:1241, 1/AA/1296:1308, 1/AA/1329:1337 | No text annotation | ||
| J3_4V5A_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V5A_060 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_4V5A_061 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4V5A_014 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_4V5A_062 | 1/BA/269:271, 1/BA/271:272, 1/BA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V5A_063 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4V5A_016 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_4V5A_017 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_4V5A_065 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_4V5A_019 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V5A_020 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4V5A_068 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4V5A_021 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V5A_022 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation | ||
| J3_4V5A_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_4V5A_024 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V5A_025 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_4V5A_026 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_4V5A_070 | 1/CA/46:52, 1/CA/359:367, 1/CA/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4V5A_027 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation | homologous J3_6CZR_016 NA | |
| J3_4V5A_071 | 1/CA/586:588, 1/CA/651:655, 1/CA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4V5A_028 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V5A_029 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation | geometric J3_4LFB_001 J3_02285.1 | |
| J3_4V5A_073 | 1/CA/933:939, 1/CA/1344:1350, 1/CA/1372:1384 | No text annotation | ||
| J3_4V5A_030 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4V5A_031 | 1/CA/941:946, 1/CA/1235:1237, 1/CA/1337:1342 | No text annotation | ||
| J3_4V5A_032 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4V5A_033 | 1/CA/990:993, 1/CA/1045:1048, 1/CA/1209:1215 | No text annotation | ||
| J3_4V5A_074 | 1/CA/990:993, 1/CA/1045:1050, 1/CA/1208:1215 | No text annotation | ||
| J3_4V5A_075 | 1/CA/990:1007, 1/CA/1022:1050, 1/CA/1208:1215 | No text annotation | ||
| J3_4V5A_034 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4V5A_035 | 1/CA/1073:1074, 1/CA/1083:1087, 1/CA/1098:1102 | No text annotation | homologous J3_5J7L_009 NA | |
| J3_4V5A_036 | 1/CA/1115:1118, 1/CA/1155:1158, 1/CA/1181:1185 | No text annotation | ||
| J3_4V5A_037 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation | geometric J3_4LFB_009 J3_03192.1 | |
| J3_4V5A_078 | 1/CA/1237:1241, 1/CA/1296:1308, 1/CA/1329:1337 | No text annotation | ||
| J3_4V5A_038 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V5A_079 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_4V5A_080 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4V5A_039 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_4V5A_081 | 1/DA/269:271, 1/DA/271:272, 1/DA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V5A_082 | 1/DA/297:301, 1/DA/316:325, 1/DA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4V5A_041 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_4V5A_042 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_4V5A_084 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_4V5A_044 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V5A_045 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4V5A_087 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4V5A_046 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V5A_047 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation | ||
| J3_4V5A_048 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_4V5A_049 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V5A_050 | 1/DB/11:16, 1/DB/68:69, 1/DB/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_4V5A_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4V5A_028 | 1/AA/142:144, 1/AA/178:183, 1/AA/194:198, 1/AA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V5A_029 | 1/AA/569:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:881 | No text annotation | ||
| J4_4V5A_004 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4V5A_005 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4V5A_030 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | ||
| J4_4V5A_007 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4V5A_008 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_4V5A_031 | 1/BA/1444:1445A, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4V5A_010 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1764, 1/BA/1988:1990 | No text annotation | ||
| J4_4V5A_011 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_4V5A_012 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V5A_013 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_4V5A_014 | 1/CA/115:122, 1/CA/239:240, 1/CA/286:289, 1/CA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4V5A_032 | 1/CA/142:144, 1/CA/178:183, 1/CA/194:198, 1/CA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V5A_016 | 1/CA/575:577, 1/CA/764:769, 1/CA/810:821, 1/CA/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4V5A_018 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4V5A_019 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4V5A_034 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:656 | No text annotation | ||
| J4_4V5A_021 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4V5A_022 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_4V5A_023 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4V5A_024 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1764, 1/DA/1988:1990 | No text annotation | ||
| J4_4V5A_025 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_4V5A_026 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V5A_027 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_4V5A_016 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V5A_002 | 1/AA/54:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:357 | No text annotation | ||
| J5_4V5A_003 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4V5A_004 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4V5A_017 | 1/BA/2054:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2615 | No text annotation | ||
| J5_4V5A_007 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J5_4V5A_008 | 1/BA/2282:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2395, 1/BA/2421:2427 | No text annotation | ||
| J5_4V5A_018 | 1/CA/36:39, 1/CA/403:406, 1/CA/436:442, 1/CA/492:500, 1/CA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V5A_010 | 1/CA/54:61, 1/CA/106:113, 1/CA/314:316, 1/CA/337:339, 1/CA/350:357 | No text annotation | ||
| J5_4V5A_011 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4V5A_012 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:813, 1/DA/1194:1198, 1/DA/1247:1256 | No text annotation | ||
| J5_4V5A_019 | 1/DA/2054:2064, 1/DA/2446:2453, 1/DA/2500:2507, 1/DA/2582:2588, 1/DA/2606:2615 | No text annotation | ||
| J5_4V5A_014 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J5_4V5A_015 | 1/DA/2282:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2395, 1/DA/2421:2427 | No text annotation | ||
| J6_4V5A_001 | 1/BA/44:45, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V5A_003 | 1/DA/44:45, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J7_4V5A_003 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J7_4V5A_004 | 1/DA/817:822, 1/DA/835:836, 1/DA/943:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation | ||
| J8_4V5A_001 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2395, 1/BA/2421:2435 | No text annotation | ||
| J8_4V5A_002 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2395, 1/DA/2421:2435 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V5A_053 | No text annotation | ||
| J3_4V5A_057 | No text annotation | ||
| J3_4V5A_015 | No text annotation | ||
| J3_4V5A_064 | No text annotation | ||
| J3_4V5A_018 | No text annotation | ||
| J3_4V5A_066 | No text annotation | ||
| J3_4V5A_067 | No text annotation | ||
| J3_4V5A_069 | No text annotation | ||
| J3_4V5A_072 | No text annotation | ||
| J3_4V5A_076 | No text annotation | ||
| J3_4V5A_077 | No text annotation | ||
| J3_4V5A_040 | No text annotation | ||
| J3_4V5A_083 | No text annotation | ||
| J3_4V5A_043 | No text annotation | ||
| J3_4V5A_085 | No text annotation | ||
| J3_4V5A_086 | No text annotation | ||
| J3_4V5A_088 | No text annotation | ||
| J4_4V5A_002 | No text annotation | ||
| J4_4V5A_003 | No text annotation | ||
| J4_4V5A_006 | No text annotation | ||
| J4_4V5A_009 | No text annotation | ||
| J4_4V5A_015 | No text annotation | ||
| J4_4V5A_017 | No text annotation | ||
| J4_4V5A_035 | tRNA junction | ||
| J4_4V5A_033 | tRNA junction | ||
| J4_4V5A_020 | No text annotation | ||
| J5_4V5A_001 | No text annotation | ||
| J5_4V5A_005 | No text annotation | ||
| J5_4V5A_006 | No text annotation | ||
| J5_4V5A_009 | No text annotation | ||
| J5_4V5A_013 | No text annotation | ||
| J6_4V5A_002 | No text annotation | ||
| J7_4V5A_001 | No text annotation | ||
| J7_4V5A_002 | No text annotation |
Coloring options: