HL_4V5A_049

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V5A|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_049 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1415

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V5A|1|BA|G|410
4V5A|1|BA|G|411
4V5A|1|BA|A|412
4V5A|1|BA|C|413
4V5A|1|BA|C|414
4V5A|1|BA|A|415
4V5A|1|BA|C|416
4V5A|1|BA|C|417

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S RIBOSOMAL PROTEIN L15