HL_4V5A_122

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_122 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3398

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V5A|1|CA|G|725
4V5A|1|CA|C|726
4V5A|1|CA|G|727
4V5A|1|CA|A|728
4V5A|1|CA|A|729
4V5A|1|CA|G|730
4V5A|1|CA|G|731
4V5A|1|CA|C|732

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S RIBOSOMAL PROTEIN S15

Chain CR

30S RIBOSOMAL PROTEIN S18