HL_4V5A_184

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGUGAUGAGCCC

Length

13 nucleotides

Bulged bases

4V5A|1|DA|G|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_184 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2011

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V5A|1|DA|G|1717
4V5A|1|DA|G|1718
4V5A|1|DA|G|1719
4V5A|1|DA|U|1720
4V5A|1|DA|G|1721
4V5A|1|DA|A|1722
4V5A|1|DA|U|1739
4V5A|1|DA|G|1740
4V5A|1|DA|A|1741
4V5A|1|DA|G|1742
4V5A|1|DA|C|1743
4V5A|1|DA|C|1744
4V5A|1|DA|C|1745

Current chains

Chain DA

23S ribosomal RNA

Nearby chains