HL_4V5A_201

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4V5A|1|DA|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_201 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.3706

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5A|1|DA|C|2471
4V5A|1|DA|G|2472
4V5A|1|DA|U|2473
4V5A|1|DA|C|2474
4V5A|1|DA|C|2475
4V5A|1|DA|A|2476
4V5A|1|DA|C|2477
4V5A|1|DA|A|2478
4V5A|1|DA|G|2479

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DQ

50S RIBOSOMAL PROTEIN L16