HL_4V5A_219

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGUUGCCAGCGGUUCGGCCGGGCACUCU

Length

28 nucleotides

Bulged bases

4V5A|1|AA|U|1125, 4V5A|1|AA|U|1136, 4V5A|1|AA|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|AA|A|1123
4V5A|1|AA|G|1124
4V5A|1|AA|U|1125
4V5A|1|AA|U|1126
4V5A|1|AA|G|1127
4V5A|1|AA|C|1128
4V5A|1|AA|C|1129
4V5A|1|AA|A|1130
4V5A|1|AA|G|1131
4V5A|1|AA|C|1132
4V5A|1|AA|G|1133
4V5A|1|AA|G|1134
4V5A|1|AA|U|1135
4V5A|1|AA|U|1136
4V5A|1|AA|C|1137
4V5A|1|AA|G|1138
4V5A|1|AA|G|1139
4V5A|1|AA|C|1140
4V5A|1|AA|C|1141
4V5A|1|AA|G|1142
4V5A|1|AA|G|1143
4V5A|1|AA|G|1144
4V5A|1|AA|C|1145
4V5A|1|AA|A|1146
4V5A|1|AA|C|1147
4V5A|1|AA|U|1148
4V5A|1|AA|C|1149
4V5A|1|AA|U|1150

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10