HL_4V5A_253

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V5A|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_253 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.3743

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V5A|1|DA|C|641
4V5A|1|DA|G|642
4V5A|1|DA|A|643
4V5A|1|DA|A|644
4V5A|1|DA|C|645
4V5A|1|DA|A|646
4V5A|1|DA|G|647

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15