HL_4V5A_260

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V5A|1|DA|G|2307, 4V5A|1|DA|A|2310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_260 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2998

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5A|1|DA|G|2302
4V5A|1|DA|G|2303
4V5A|1|DA|G|2304
4V5A|1|DA|A|2305
4V5A|1|DA|C|2306
4V5A|1|DA|G|2307
4V5A|1|DA|G|2308
4V5A|1|DA|A|2309
4V5A|1|DA|A|2310
4V5A|1|DA|A|2311
4V5A|1|DA|U|2312
4V5A|1|DA|C|2313
4V5A|1|DA|C|2314

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S RIBOSOMAL PROTEIN L5