HL_4V5A_266

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAGACAGCCAGUCGAGU

Length

20 nucleotides

Bulged bases

4V5A|1|BA|C|1043, 4V5A|1|BA|G|1044, 4V5A|1|BA|A|1046, 4V5A|1|BA|C|1049, 4V5A|1|BA|C|1053, 4V5A|1|BA|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|BA|G|1042
4V5A|1|BA|C|1043
4V5A|1|BA|G|1044
4V5A|1|BA|A|1045
4V5A|1|BA|A|1046
4V5A|1|BA|G|1047
4V5A|1|BA|A|1048
4V5A|1|BA|C|1049
4V5A|1|BA|A|1050
4V5A|1|BA|G|1051
4V5A|1|BA|C|1052
4V5A|1|BA|C|1053
4V5A|1|BA|A|1106
4V5A|1|BA|G|1107
4V5A|1|BA|U|1108
4V5A|1|BA|C|1109
4V5A|1|BA|G|1110
4V5A|1|BA|A|1111
4V5A|1|BA|G|1112
4V5A|1|BA|U|1113

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S RIBOSOMAL PROTEIN L6