HL_4V5B_012

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

4V5B|1|AB|U|321, 4V5B|1|AB|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_012 not in the Motif Atlas

Homologous match to HL_9DFE_010

Geometric discrepancy: 0.4003

The information below is about HL_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V5B|1|AB|G|319
4V5B|1|AB|A|320
4V5B|1|AB|U|321
4V5B|1|AB|A|322
4V5B|1|AB|C|323

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L4