4V5B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V5B_200 | 1/AA/30:54 | No text annotation | ||
| HL_4V5B_001 | 1/AA/33:49 | No text annotation | ||
| HL_4V5B_201 | 1/AA/85:91 | No text annotation | ||
| HL_4V5B_002 | 1/AA/86:90 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V5B_003 | 1/AB/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_4V5B_202 | 1/AB/86:96 | No text annotation | homologous HL_7A0S_002 HL_50418.1 | |
| HL_4V5B_247 | 1/AB/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_4V5B_006 | 1/AB/137:142 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4V5B_007 | 1/AB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V5B_008 | 1/AB/188:208 | No text annotation | ||
| HL_4V5B_009 | 1/AB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4V5B_010 | 1/AB/239:258 | No text annotation | ||
| HL_4V5B_011 | 1/AB/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_4V5B_203 | 1/AB/318:333 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
| HL_4V5B_012 | 1/AB/319:323 | No text annotation | homologous HL_9DFE_010 HL_75660.5 | |
| HL_4V5B_013 | 1/AB/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_4V5B_014 | 1/AB/381:393 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
| HL_4V5B_015 | 1/AB/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4V5B_016 | 1/AB/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_4V5B_017 | 1/AB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V5B_018 | 1/AB/543:550 | No text annotation | geometric HL_3SKI_003 HL_48417.5 | |
| HL_4V5B_019 | 1/AB/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_4V5B_206 | 1/AB/604:624 | No text annotation | ||
| HL_4V5B_020 | 1/AB/611:617 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_4V5B_021 | 1/AB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_4V5B_022 | 1/AB/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_4V5B_023 | 1/AB/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V5B_024 | 1/AB/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4V5B_248 | 1/AB/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V5B_026 | 1/AB/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_4V5B_028 | 1/AB/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_4V5B_029 | 1/AB/977:986 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_4V5B_030 | 1/AB/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4V5B_031 | 1/AB/1171:1178 | No text annotation | geometric HL_5TBW_015 NA | |
| HL_4V5B_032 | 1/AB/1221:1228 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V5B_033 | 1/AB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_4V5B_034 | 1/AB/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4V5B_035 | 1/AB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V5B_036 | 1/AB/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V5B_037 | 1/AB/1449:1462 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_4V5B_038 | 1/AB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4V5B_039 | 1/AB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V5B_040 | 1/AB/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4V5B_041 | 1/AB/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_4V5B_042 | 1/AB/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_4V5B_043 | 1/AB/1691:1696 | UNCG | geometric HL_4JF2_003 HL_34617.5 | |
| HL_4V5B_207 | 1/AB/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
| HL_4V5B_044 | 1/AB/1728:1731 | No text annotation | ||
| HL_4V5B_045 | 1/AB/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V5B_208 | 1/AB/1798:1821 | No text annotation | ||
| HL_4V5B_046 | 1/AB/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V5B_047 | 1/AB/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_4V5B_048 | 1/AB/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V5B_249 | 1/AB/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_4V5B_050 | 1/AB/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_4V5B_051 | 1/AB/2142:2149 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_4V5B_052 | 1/AB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V5B_053 | 1/AB/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_4V5B_054 | 1/AB/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_4V5B_250 | 1/AB/2304:2312 | No text annotation | ||
| HL_4V5B_056 | 1/AB/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V5B_057 | 1/AB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V5B_058 | 1/AB/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_4V5B_251 | 1/AB/2401:2415 | No text annotation | ||
| HL_4V5B_059 | 1/AB/2403:2414 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_4V5B_060 | 1/AB/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V5B_252 | 1/AB/2528:2535 | No text annotation | homologous HL_7A0S_060 HL_31585.4 | |
| HL_4V5B_062 | 1/AB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V5B_063 | 1/AB/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.7 | |
| HL_4V5B_211 | 1/AB/2652:2668 | No text annotation | ||
| HL_4V5B_064 | 1/AB/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V5B_065 | 1/AB/2700:2707 | No text annotation | ||
| HL_4V5B_066 | 1/AB/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_4V5B_253 | 1/AB/2796:2800 | Mini UNCG | geometric HL_4V9F_021 HL_48778.2 | |
| HL_4V5B_068 | 1/AB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V5B_069 | 1/AB/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_4V5B_070 | 1/BA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V5B_071 | 1/BA/83:86 | No text annotation | ||
| HL_4V5B_254 | 1/BA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V5B_073 | 1/BA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V5B_215 | 1/BA/203:214 | No text annotation | ||
| HL_4V5B_074 | 1/BA/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_4V5B_075 | 1/BA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V5B_076 | 1/BA/296:301 | GNRA | homologous HL_6CZR_078 NA | |
| HL_4V5B_077 | 1/BA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V5B_078 | 1/BA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V5B_079 | 1/BA/377:386 | No text annotation | ||
| HL_4V5B_080 | 1/BA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V5B_081 | 1/BA/459:473 | No text annotation | ||
| HL_4V5B_082 | 1/BA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V5B_083 | 1/BA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V5B_084 | 1/BA/684:706 | No text annotation | ||
| HL_4V5B_085 | 1/BA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4V5B_217 | 1/BA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V5B_087 | 1/BA/840:846 | No text annotation | geometric HL_4WF9_009 HL_81100.2 | |
| HL_4V5B_088 | 1/BA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4V5B_255 | 1/BA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V5B_090 | 1/BA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V5B_091 | 1/BA/1012:1017 | GNRA | geometric HL_4V88_210 NA | |
| HL_4V5B_092 | 1/BA/1027:1034 | No text annotation | homologous HL_6CZR_094 NA | |
| HL_4V5B_256 | 1/BA/1075:1082 | No text annotation | ||
| HL_4V5B_093 | 1/BA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4V5B_094 | 1/BA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V5B_095 | 1/BA/1164:1172 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_4V5B_257 | 1/BA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V5B_097 | 1/BA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_4V5B_098 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V5B_219 | 1/BA/1440:1461 | No text annotation | ||
| HL_4V5B_099 | 1/BA/1444:1458 | No text annotation | ||
| HL_4V5B_100 | 1/BA/1512:1523 | No text annotation | ||
| HL_4V5B_221 | 1/CA/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_4V5B_101 | 1/CA/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4V5B_222 | 1/CA/85:91 | No text annotation | ||
| HL_4V5B_102 | 1/CA/86:90 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V5B_103 | 1/CB/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_4V5B_104 | 1/CB/85:97 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_4V5B_105 | 1/CB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_4V5B_106 | 1/CB/134:145 | No text annotation | ||
| HL_4V5B_107 | 1/CB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V5B_108 | 1/CB/188:208 | No text annotation | ||
| HL_4V5B_109 | 1/CB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4V5B_110 | 1/CB/239:258 | No text annotation | ||
| HL_4V5B_111 | 1/CB/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_4V5B_112 | 1/CB/327:335 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.2 | |
| HL_4V5B_113 | 1/CB/381:393 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
| HL_4V5B_114 | 1/CB/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4V5B_115 | 1/CB/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_4V5B_116 | 1/CB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V5B_117 | 1/CB/541:552 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_4V5B_118 | 1/CB/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_4V5B_225 | 1/CB/604:624 | No text annotation | ||
| HL_4V5B_119 | 1/CB/611:617 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_4V5B_120 | 1/CB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_4V5B_121 | 1/CB/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_4V5B_122 | 1/CB/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V5B_123 | 1/CB/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4V5B_258 | 1/CB/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V5B_125 | 1/CB/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_4V5B_127 | 1/CB/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_4V5B_128 | 1/CB/977:986 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_4V5B_129 | 1/CB/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4V5B_130 | 1/CB/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V5B_131 | 1/CB/1171:1178 | No text annotation | geometric HL_5TBW_015 NA | |
| HL_4V5B_132 | 1/CB/1221:1228 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V5B_133 | 1/CB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_4V5B_134 | 1/CB/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4V5B_135 | 1/CB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V5B_136 | 1/CB/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V5B_137 | 1/CB/1449:1462 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_4V5B_138 | 1/CB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4V5B_139 | 1/CB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V5B_140 | 1/CB/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4V5B_141 | 1/CB/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_4V5B_142 | 1/CB/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_4V5B_143 | 1/CB/1691:1696 | UNCG | geometric HL_4JF2_003 HL_34617.5 | |
| HL_4V5B_226 | 1/CB/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
| HL_4V5B_144 | 1/CB/1728:1731 | No text annotation | ||
| HL_4V5B_145 | 1/CB/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V5B_227 | 1/CB/1798:1821 | No text annotation | ||
| HL_4V5B_146 | 1/CB/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V5B_147 | 1/CB/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_4V5B_148 | 1/CB/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V5B_259 | 1/CB/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_4V5B_150 | 1/CB/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_4V5B_151 | 1/CB/2141:2150 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_4V5B_152 | 1/CB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V5B_153 | 1/CB/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_4V5B_154 | 1/CB/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_4V5B_260 | 1/CB/2304:2312 | No text annotation | ||
| HL_4V5B_156 | 1/CB/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V5B_157 | 1/CB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V5B_158 | 1/CB/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_4V5B_261 | 1/CB/2401:2415 | No text annotation | ||
| HL_4V5B_159 | 1/CB/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_4V5B_160 | 1/CB/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V5B_262 | 1/CB/2528:2535 | No text annotation | homologous HL_7A0S_060 HL_31585.4 | |
| HL_4V5B_162 | 1/CB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V5B_163 | 1/CB/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.7 | |
| HL_4V5B_230 | 1/CB/2652:2668 | No text annotation | ||
| HL_4V5B_164 | 1/CB/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V5B_165 | 1/CB/2700:2707 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V5B_166 | 1/CB/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4V5B_263 | 1/CB/2796:2800 | Mini UNCG | geometric HL_4V9F_021 HL_48778.2 | |
| HL_4V5B_168 | 1/CB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V5B_169 | 1/CB/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_4V5B_170 | 1/DA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V5B_171 | 1/DA/83:86 | No text annotation | ||
| HL_4V5B_264 | 1/DA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V5B_173 | 1/DA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V5B_233 | 1/DA/203:214 | No text annotation | ||
| HL_4V5B_174 | 1/DA/207:212 | UNCG | geometric HL_5J7L_030 HL_34617.5 | |
| HL_4V5B_175 | 1/DA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V5B_176 | 1/DA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4V5B_177 | 1/DA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V5B_178 | 1/DA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V5B_235 | 1/DA/375:389 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_4V5B_179 | 1/DA/377:386 | No text annotation | ||
| HL_4V5B_180 | 1/DA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V5B_236 | 1/DA/454:479 | No text annotation | ||
| HL_4V5B_181 | 1/DA/459:472 | No text annotation | ||
| HL_4V5B_182 | 1/DA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V5B_237 | 1/DA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V5B_184 | 1/DA/683:707 | No text annotation | ||
| HL_4V5B_185 | 1/DA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_4V5B_265 | 1/DA/784:798 | No text annotation | ||
| HL_4V5B_186 | 1/DA/785:797 | No text annotation | ||
| HL_4V5B_187 | 1/DA/840:846 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_4V5B_188 | 1/DA/861:868 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_4V5B_241 | 1/DA/887:910 | No text annotation | ||
| HL_4V5B_189 | 1/DA/897:902 | GNRA | geometric HL_4V9F_048 HL_37824.7 | |
| HL_4V5B_190 | 1/DA/1009:1020 | No text annotation | homologous HL_5J7L_216 HL_78284.1 | |
| HL_4V5B_242 | 1/DA/1027:1034 | tRNA D-loop | geometric HL_2AZX_004 HL_20811.4 | |
| HL_4V5B_191 | 1/DA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V5B_192 | 1/DA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V5B_193 | 1/DA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_4V5B_266 | 1/DA/1163:1173 | No text annotation | ||
| HL_4V5B_194 | 1/DA/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_4V5B_195 | 1/DA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V5B_245 | 1/DA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_4V5B_197 | 1/DA/1356:1366 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_4V5B_246 | 1/DA/1445:1457 | No text annotation | ||
| HL_4V5B_198 | 1/DA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V5B_199 | 1/DA/1515:1520 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5B_004 | No text annotation | ||
| HL_4V5B_005 | No text annotation | ||
| HL_4V5B_204 | tRNA anticodon loop | ||
| HL_4V5B_205 | No text annotation | ||
| HL_4V5B_025 | No text annotation | ||
| HL_4V5B_027 | No text annotation | ||
| HL_4V5B_049 | No text annotation | ||
| HL_4V5B_209 | No text annotation | ||
| HL_4V5B_055 | No text annotation | ||
| HL_4V5B_210 | No text annotation | ||
| HL_4V5B_061 | No text annotation | ||
| HL_4V5B_212 | No text annotation | ||
| HL_4V5B_067 | Other HL | ||
| HL_4V5B_213 | No text annotation | ||
| HL_4V5B_214 | No text annotation | ||
| HL_4V5B_072 | No text annotation | ||
| HL_4V5B_216 | Anticodon loop related | ||
| HL_4V5B_086 | No text annotation | ||
| HL_4V5B_089 | GNRA with extra cWW | ||
| HL_4V5B_218 | No text annotation | ||
| HL_4V5B_096 | tRNA anticodon loop | ||
| HL_4V5B_220 | No text annotation | ||
| HL_4V5B_223 | No text annotation | ||
| HL_4V5B_224 | tRNA anticodon loop | ||
| HL_4V5B_124 | No text annotation | ||
| HL_4V5B_126 | No text annotation | ||
| HL_4V5B_149 | No text annotation | ||
| HL_4V5B_228 | No text annotation | ||
| HL_4V5B_155 | No text annotation | ||
| HL_4V5B_229 | No text annotation | ||
| HL_4V5B_161 | No text annotation | ||
| HL_4V5B_167 | Other HL | ||
| HL_4V5B_231 | No text annotation | ||
| HL_4V5B_232 | No text annotation | ||
| HL_4V5B_172 | No text annotation | ||
| HL_4V5B_234 | Anticodon loop related | ||
| HL_4V5B_183 | No text annotation | ||
| HL_4V5B_238 | No text annotation | ||
| HL_4V5B_239 | No text annotation | ||
| HL_4V5B_240 | No text annotation | ||
| HL_4V5B_243 | No text annotation | ||
| HL_4V5B_244 | No text annotation | ||
| HL_4V5B_196 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V5B_001 | 1/AA/17:18, 1/AA/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_4V5B_002 | 1/AA/23:28, 1/AA/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_4V5B_003 | 1/AA/30:33, 1/AA/49:54 | No text annotation | homologous IL_7A0S_104 IL_05192.4 | |
| IL_4V5B_004 | 1/AA/71:79, 1/AA/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_4V5B_005 | 1/AB/24:30, 1/AB/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_4V5B_006 | 1/AB/36:37, 1/AB/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_4V5B_007 | 1/AB/43:44, 1/AB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4V5B_008 | 1/AB/81:85, 1/AB/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_4V5B_009 | 1/AB/183:184, 1/AB/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_4V5B_010 | 1/AB/274:281, 1/AB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V5B_394 | 1/AB/293:295, 1/AB/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
| IL_4V5B_314 | 1/AB/481:484, 1/AB/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_4V5B_395 | 1/AB/536:539, 1/AB/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V5B_013 | 1/AB/564:566, 1/AB/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_4V5B_014 | 1/AB/605:611, 1/AB/617:623 | No text annotation | ||
| IL_4V5B_015 | 1/AB/672:674, 1/AB/806:808 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_4V5B_016 | 1/AB/674:678, 1/AB/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_4V5B_017 | 1/AB/697:698, 1/AB/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V5B_018 | 1/AB/702:703, 1/AB/728:730 | Single bulged G | geometric IL_4WF9_023 IL_00225.13 | |
| IL_4V5B_019 | 1/AB/703:707, 1/AB/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V5B_020 | 1/AB/738:740, 1/AB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4V5B_021 | 1/AB/775:777, 1/AB/787:791 | Multiple bulged bases | geometric IL_4WF9_027 IL_06549.2 | |
| IL_4V5B_022 | 1/AB/837:838, 1/AB/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_4V5B_023 | 1/AB/844:848, 1/AB/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_4V5B_024 | 1/AB/850:851, 1/AB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V5B_396 | 1/AB/853:862, 1/AB/915:924 | No text annotation | ||
| IL_4V5B_025 | 1/AB/855:857, 1/AB/921:922 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4V5B_026 | 1/AB/857:862, 1/AB/915:921 | No text annotation | ||
| IL_4V5B_027 | 1/AB/862:863, 1/AB/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.13 | |
| IL_4V5B_397 | 1/AB/862:868, 1/AB/909:915 | No text annotation | ||
| IL_4V5B_028 | 1/AB/863:869, 1/AB/908:913 | No text annotation | ||
| IL_4V5B_318 | 1/AB/870:872, 1/AB/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4V5B_398 | 1/AB/994:996, 1/AB/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V5B_031 | 1/AB/998:1002, 1/AB/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_4V5B_032 | 1/AB/1004:1011, 1/AB/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4V5B_033 | 1/AB/1011:1013, 1/AB/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V5B_034 | 1/AB/1018:1024, 1/AB/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4V5B_035 | 1/AB/1024:1030, 1/AB/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4V5B_036 | 1/AB/1031:1034, 1/AB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V5B_399 | 1/AB/1038:1041, 1/AB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V5B_038 | 1/AB/1043:1053, 1/AB/1106:1112 | No text annotation | ||
| IL_4V5B_039 | 1/AB/1055:1057, 1/AB/1081:1104 | No text annotation | ||
| IL_4V5B_040 | 1/AB/1059:1062, 1/AB/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4V5B_400 | 1/AB/1196:1198, 1/AB/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_4V5B_401 | 1/AB/1201:1206, 1/AB/1240:1244 | No text annotation | ||
| IL_4V5B_043 | 1/AB/1208:1215, 1/AB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V5B_044 | 1/AB/1310:1313, 1/AB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V5B_045 | 1/AB/1319:1323, 1/AB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V5B_046 | 1/AB/1351:1356, 1/AB/1375:1380 | No text annotation | ||
| IL_4V5B_047 | 1/AB/1357:1361, 1/AB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V5B_048 | 1/AB/1415:1416, 1/AB/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V5B_049 | 1/AB/1417:1421, 1/AB/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V5B_321 | 1/AB/1417:1423, 1/AB/1575:1581 | No text annotation | ||
| IL_4V5B_402 | 1/AB/1432:1435, 1/AB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V5B_403 | 1/AB/1437:1440, 1/AB/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_4V5B_052 | 1/AB/1468:1471, 1/AB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V5B_404 | 1/AB/1474:1478, 1/AB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V5B_405 | 1/AB/1481:1482, 1/AB/1507:1510 | No text annotation | ||
| IL_4V5B_055 | 1/AB/1489:1491, 1/AB/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
| IL_4V5B_056 | 1/AB/1526:1529, 1/AB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V5B_057 | 1/AB/1651:1656, 1/AB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4V5B_058 | 1/AB/1663:1665, 1/AB/1995:1997 | Isolated tWW turn | geometric IL_5J7L_305 IL_67095.2 | |
| IL_4V5B_059 | 1/AB/1666:1669, 1/AB/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
| IL_4V5B_324 | 1/AB/1666:1674, 1/AB/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4V5B_060 | 1/AB/1669:1674, 1/AB/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_4V5B_061 | 1/AB/1686:1691, 1/AB/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4V5B_062 | 1/AB/1712:1718, 1/AB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V5B_063 | 1/AB/1720:1726, 1/AB/1734:1740 | No text annotation | ||
| IL_4V5B_064 | 1/AB/1727:1728, 1/AB/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_4V5B_326 | 1/AB/1770:1771, 1/AB/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_4V5B_066 | 1/AB/1798:1804, 1/AB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V5B_067 | 1/AB/1837:1840, 1/AB/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V5B_327 | 1/AB/1837:1842, 1/AB/1898:1903 | No text annotation | ||
| IL_4V5B_068 | 1/AB/1841:1842, 1/AB/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.4 | |
| IL_4V5B_069 | 1/AB/1846:1849, 1/AB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V5B_406 | 1/AB/1851:1860, 1/AB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4V5B_070 | 1/AB/1864:1867, 1/AB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V5B_071 | 1/AB/1933:1945, 1/AB/1961:1967 | No text annotation | ||
| IL_4V5B_072 | 1/AB/2050:2052, 1/AB/2617:2618 | Major groove platform | homologous IL_4WF9_078 IL_48076.6 | |
| IL_4V5B_073 | 1/AB/2054:2056, 1/AB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4V5B_407 | 1/AB/2067:2069, 1/AB/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
| IL_4V5B_075 | 1/AB/2070:2071, 1/AB/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V5B_076 | 1/AB/2081:2083, 1/AB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V5B_077 | 1/AB/2085:2087, 1/AB/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V5B_078 | 1/AB/2103:2106, 1/AB/2183:2186 | No text annotation | ||
| IL_4V5B_330 | 1/AB/2103:2107, 1/AB/2182:2186 | No text annotation | ||
| IL_4V5B_080 | 1/AB/2201:2204, 1/AB/2220:2222 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V5B_081 | 1/AB/2350:2353, 1/AB/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
| IL_4V5B_082 | 1/AB/2401:2403, 1/AB/2414:2415 | No text annotation | ||
| IL_4V5B_083 | 1/AB/2456:2459, 1/AB/2493:2495 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_4V5B_331 | 1/AB/2459:2461, 1/AB/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
| IL_4V5B_085 | 1/AB/2466:2470, 1/AB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V5B_086 | 1/AB/2507:2508, 1/AB/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V5B_087 | 1/AB/2510:2512, 1/AB/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V5B_088 | 1/AB/2512:2513, 1/AB/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_4V5B_089 | 1/AB/2522:2523, 1/AB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V5B_090 | 1/AB/2591:2592, 1/AB/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_4V5B_332 | 1/AB/2636:2640, 1/AB/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4V5B_092 | 1/AB/2652:2658, 1/AB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V5B_093 | 1/AB/2680:2684, 1/AB/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V5B_408 | 1/AB/2687:2692, 1/AB/2717:2722 | No text annotation | ||
| IL_4V5B_095 | 1/AB/2694:2696, 1/AB/2711:2715 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_4V5B_096 | 1/AB/2737:2744, 1/AB/2760:2767 | No text annotation | ||
| IL_4V5B_097 | 1/AB/2806:2811, 1/AB/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_4V5B_098 | 1/AB/2838:2839, 1/AB/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4V5B_099 | 1/AB/2843:2846, 1/AB/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V5B_100 | 1/AB/2847:2852, 1/AB/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_4V5B_334 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_4V5B_102 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_4V5B_103 | 1/BA/47:52, 1/BA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_4V5B_409 | 1/BA/53:56, 1/BA/356:358 | No text annotation | ||
| IL_4V5B_105 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V5B_106 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_4V5B_410 | 1/BA/70:73, 1/BA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V5B_108 | 1/BA/75:76, 1/BA/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.13 | |
| IL_4V5B_411 | 1/BA/128:131, 1/BA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V5B_110 | 1/BA/132:136, 1/BA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V5B_111 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_4V5B_112 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V5B_113 | 1/BA/203:207, 1/BA/212:214 | No text annotation | homologous IL_5J7L_013 IL_66997.2 | |
| IL_4V5B_114 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V5B_412 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V5B_413 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_4V5B_414 | 1/BA/371:375, 1/BA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_4V5B_118 | 1/BA/375:377, 1/BA/386:389 | Decoding loop related | geometric IL_5Z1I_003 NA | |
| IL_4V5B_415 | 1/BA/408:416, 1/BA/427:434 | No text annotation | ||
| IL_4V5B_337 | 1/BA/440:442, 1/BA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V5B_416 | 1/BA/445:455, 1/BA/477:489 | No text annotation | ||
| IL_4V5B_121 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_4V5B_122 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | homologous IL_5J7L_025 IL_54177.4 | |
| IL_4V5B_123 | 1/BA/567:575, 1/BA/880:883 | Tandem non-canonical cWW pairs | geometric IL_4EYA_008 IL_51479.1 | |
| IL_4V5B_124 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V5B_339 | 1/BA/591:596, 1/BA/644:648 | No text annotation | ||
| IL_4V5B_125 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V5B_126 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4V5B_127 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V5B_128 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V5B_417 | 1/BA/658:659, 1/BA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V5B_418 | 1/BA/662:667, 1/BA/739:743 | No text annotation | ||
| IL_4V5B_419 | 1/BA/672:680, 1/BA/710:734 | No text annotation | ||
| IL_4V5B_131 | 1/BA/673:680, 1/BA/710:717 | No text annotation | ||
| IL_4V5B_420 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V5B_133 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_17136.7 | |
| IL_4V5B_421 | 1/BA/779:784, 1/BA/798:803 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_76308.6 | |
| IL_4V5B_134 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V5B_135 | 1/BA/922:924, 1/BA/1392:1395 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 IL_57744.1 | |
| IL_4V5B_422 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_4V5B_137 | 1/BA/933:936, 1/BA/1379:1384 | No text annotation | ||
| IL_4V5B_343 | 1/BA/952:954, 1/BA/1226:1229 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_4V5B_423 | 1/BA/955:984, 1/BA/1221:1225 | No text annotation | ||
| IL_4V5B_138 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4V5B_139 | 1/BA/997:1002, 1/BA/1038:1044 | No text annotation | ||
| IL_4V5B_140 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | geometric IL_2PN3_003 IL_89505.4 | |
| IL_4V5B_345 | 1/BA/1048:1056, 1/BA/1204:1209 | No text annotation | ||
| IL_4V5B_141 | 1/BA/1051:1056, 1/BA/1204:1207 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_4V5B_424 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_4V5B_143 | 1/BA/1073:1087, 1/BA/1098:1102 | No text annotation | ||
| IL_4V5B_144 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V5B_425 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4V5B_146 | 1/BA/1158:1162, 1/BA/1174:1181 | No text annotation | ||
| IL_4V5B_147 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V5B_148 | 1/BA/1255:1258, 1/BA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_4V5B_149 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V5B_150 | 1/BA/1303:1309, 1/BA/1328:1334 | No text annotation | ||
| IL_4V5B_347 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_4V5B_152 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_417 NA | |
| IL_4V5B_153 | 1/BA/1407:1409, 1/BA/1491:1494 | No text annotation | geometric IL_2A64_008 IL_55516.2 | |
| IL_4V5B_154 | 1/BA/1410:1414, 1/BA/1486:1490 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_4V5B_348 | 1/BA/1416:1421, 1/BA/1479:1484 | No text annotation | ||
| IL_4V5B_426 | 1/BA/1430:1436, 1/BA/1465:1470 | No text annotation | ||
| IL_4V5B_157 | 1/BA/1440:1444, 1/BA/1458:1461 | No text annotation | ||
| IL_4V5B_158 | 1/CA/17:18, 1/CA/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_4V5B_427 | 1/CA/23:32, 1/CA/50:60 | No text annotation | ||
| IL_4V5B_159 | 1/CB/24:30, 1/CB/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_4V5B_160 | 1/CB/36:37, 1/CB/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_4V5B_161 | 1/CB/43:44, 1/CB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4V5B_162 | 1/CB/75:76, 1/CB/110:112 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_4V5B_353 | 1/CB/81:85, 1/CB/97:105 | No text annotation | ||
| IL_4V5B_164 | 1/CB/183:184, 1/CB/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_4V5B_165 | 1/CB/269:272, 1/CB/365:370 | No text annotation | ||
| IL_4V5B_428 | 1/CB/274:281, 1/CB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V5B_429 | 1/CB/293:295, 1/CB/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_4V5B_356 | 1/CB/481:484, 1/CB/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_4V5B_168 | 1/CB/536:539, 1/CB/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V5B_169 | 1/CB/605:611, 1/CB/617:623 | No text annotation | ||
| IL_4V5B_170 | 1/CB/672:674, 1/CB/806:808 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_4V5B_171 | 1/CB/674:678, 1/CB/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_4V5B_172 | 1/CB/697:698, 1/CB/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V5B_173 | 1/CB/702:703, 1/CB/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.13 | |
| IL_4V5B_174 | 1/CB/703:707, 1/CB/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V5B_175 | 1/CB/738:740, 1/CB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4V5B_176 | 1/CB/775:777, 1/CB/787:791 | Multiple bulged bases | geometric IL_4WF9_027 IL_06549.2 | |
| IL_4V5B_177 | 1/CB/837:838, 1/CB/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_4V5B_178 | 1/CB/844:848, 1/CB/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_4V5B_179 | 1/CB/850:851, 1/CB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V5B_430 | 1/CB/853:863, 1/CB/913:924 | No text annotation | ||
| IL_4V5B_180 | 1/CB/855:857, 1/CB/921:922 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4V5B_181 | 1/CB/857:863, 1/CB/913:921 | No text annotation | ||
| IL_4V5B_182 | 1/CB/864:869, 1/CB/908:912 | No text annotation | geometric IL_4V9F_035 IL_06691.1 | |
| IL_4V5B_183 | 1/CB/870:874, 1/CB/903:907 | Partly complementary | geometric IL_7VYX_004 IL_49751.4 | |
| IL_4V5B_431 | 1/CB/994:996, 1/CB/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V5B_185 | 1/CB/998:1002, 1/CB/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4V5B_186 | 1/CB/1004:1011, 1/CB/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4V5B_187 | 1/CB/1011:1013, 1/CB/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V5B_188 | 1/CB/1018:1024, 1/CB/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4V5B_189 | 1/CB/1024:1034, 1/CB/1121:1140 | No text annotation | ||
| IL_4V5B_432 | 1/CB/1034:1041, 1/CB/1114:1121 | No text annotation | ||
| IL_4V5B_190 | 1/CB/1038:1041, 1/CB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V5B_191 | 1/CB/1043:1053, 1/CB/1106:1112 | No text annotation | ||
| IL_4V5B_359 | 1/CB/1043:1090, 1/CB/1101:1112 | No text annotation | ||
| IL_4V5B_433 | 1/CB/1196:1198, 1/CB/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_4V5B_434 | 1/CB/1201:1206, 1/CB/1240:1244 | No text annotation | ||
| IL_4V5B_194 | 1/CB/1208:1215, 1/CB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V5B_195 | 1/CB/1310:1313, 1/CB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V5B_196 | 1/CB/1319:1323, 1/CB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V5B_197 | 1/CB/1351:1356, 1/CB/1375:1380 | No text annotation | ||
| IL_4V5B_198 | 1/CB/1357:1361, 1/CB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V5B_199 | 1/CB/1415:1416, 1/CB/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V5B_200 | 1/CB/1417:1421, 1/CB/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V5B_360 | 1/CB/1417:1423, 1/CB/1575:1581 | No text annotation | ||
| IL_4V5B_435 | 1/CB/1432:1435, 1/CB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V5B_436 | 1/CB/1437:1440, 1/CB/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_4V5B_203 | 1/CB/1468:1471, 1/CB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V5B_437 | 1/CB/1474:1478, 1/CB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V5B_438 | 1/CB/1481:1482, 1/CB/1507:1510 | No text annotation | ||
| IL_4V5B_206 | 1/CB/1489:1491, 1/CB/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
| IL_4V5B_207 | 1/CB/1526:1529, 1/CB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V5B_208 | 1/CB/1651:1656, 1/CB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4V5B_209 | 1/CB/1663:1665, 1/CB/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_4V5B_210 | 1/CB/1666:1669, 1/CB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.7 | |
| IL_4V5B_363 | 1/CB/1666:1674, 1/CB/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4V5B_211 | 1/CB/1669:1674, 1/CB/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_4V5B_212 | 1/CB/1686:1691, 1/CB/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4V5B_213 | 1/CB/1712:1718, 1/CB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V5B_214 | 1/CB/1720:1726, 1/CB/1734:1740 | No text annotation | ||
| IL_4V5B_215 | 1/CB/1727:1728, 1/CB/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_4V5B_365 | 1/CB/1770:1771, 1/CB/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_4V5B_217 | 1/CB/1798:1804, 1/CB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V5B_218 | 1/CB/1837:1840, 1/CB/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V5B_366 | 1/CB/1837:1842, 1/CB/1898:1903 | No text annotation | ||
| IL_4V5B_219 | 1/CB/1841:1842, 1/CB/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.4 | |
| IL_4V5B_220 | 1/CB/1846:1849, 1/CB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V5B_439 | 1/CB/1851:1860, 1/CB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4V5B_221 | 1/CB/1864:1867, 1/CB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V5B_222 | 1/CB/1933:1945, 1/CB/1961:1967 | No text annotation | ||
| IL_4V5B_223 | 1/CB/2050:2052, 1/CB/2617:2618 | Major groove platform | homologous IL_4WF9_078 IL_48076.6 | |
| IL_4V5B_224 | 1/CB/2054:2056, 1/CB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4V5B_440 | 1/CB/2067:2069, 1/CB/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
| IL_4V5B_226 | 1/CB/2070:2071, 1/CB/2438:2441 | Minor groove platform | geometric IL_7RQB_081 NA | |
| IL_4V5B_227 | 1/CB/2081:2083, 1/CB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V5B_228 | 1/CB/2085:2087, 1/CB/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V5B_229 | 1/CB/2103:2106, 1/CB/2183:2186 | No text annotation | ||
| IL_4V5B_369 | 1/CB/2103:2108, 1/CB/2181:2186 | No text annotation | ||
| IL_4V5B_231 | 1/CB/2201:2204, 1/CB/2220:2222 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V5B_232 | 1/CB/2350:2353, 1/CB/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
| IL_4V5B_233 | 1/CB/2400:2403, 1/CB/2414:2416 | Isolated non-canonical cWW pair | geometric IL_4V88_507 NA | |
| IL_4V5B_234 | 1/CB/2456:2459, 1/CB/2493:2495 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_4V5B_370 | 1/CB/2459:2461, 1/CB/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
| IL_4V5B_236 | 1/CB/2466:2470, 1/CB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V5B_237 | 1/CB/2507:2508, 1/CB/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V5B_238 | 1/CB/2510:2512, 1/CB/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V5B_239 | 1/CB/2512:2513, 1/CB/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_4V5B_240 | 1/CB/2522:2523, 1/CB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V5B_241 | 1/CB/2591:2592, 1/CB/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_4V5B_242 | 1/CB/2636:2640, 1/CB/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4V5B_243 | 1/CB/2652:2658, 1/CB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V5B_244 | 1/CB/2680:2684, 1/CB/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V5B_441 | 1/CB/2687:2692, 1/CB/2717:2722 | No text annotation | ||
| IL_4V5B_246 | 1/CB/2694:2696, 1/CB/2711:2715 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_4V5B_247 | 1/CB/2737:2742, 1/CB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V5B_248 | 1/CB/2806:2811, 1/CB/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_4V5B_249 | 1/CB/2838:2839, 1/CB/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4V5B_250 | 1/CB/2843:2846, 1/CB/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V5B_251 | 1/CB/2847:2852, 1/CB/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_4V5B_252 | 1/DA/30:32, 1/DA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_4V5B_442 | 1/DA/42:45, 1/DA/396:400 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_4V5B_253 | 1/DA/47:52, 1/DA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_4V5B_443 | 1/DA/53:56, 1/DA/356:358 | No text annotation | ||
| IL_4V5B_255 | 1/DA/63:66, 1/DA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V5B_256 | 1/DA/67:69, 1/DA/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_4V5B_444 | 1/DA/70:73, 1/DA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V5B_258 | 1/DA/75:76, 1/DA/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.13 | |
| IL_4V5B_445 | 1/DA/128:131, 1/DA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V5B_260 | 1/DA/132:136, 1/DA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V5B_261 | 1/DA/144:146, 1/DA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_4V5B_262 | 1/DA/147:153, 1/DA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V5B_263 | 1/DA/203:207, 1/DA/212:214 | No text annotation | homologous IL_5J7L_013 IL_66997.2 | |
| IL_4V5B_264 | 1/DA/242:247, 1/DA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V5B_446 | 1/DA/249:252, 1/DA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V5B_447 | 1/DA/292:293, 1/DA/304:308 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_4V5B_267 | 1/DA/370:375, 1/DA/389:391 | No text annotation | geometric IL_4WF9_114 NA | |
| IL_4V5B_268 | 1/DA/375:377, 1/DA/386:389 | Decoding loop related | geometric IL_5Z1I_003 NA | |
| IL_4V5B_375 | 1/DA/406:416, 1/DA/427:436 | No text annotation | ||
| IL_4V5B_270 | 1/DA/409:416, 1/DA/427:433 | No text annotation | geometric IL_4LFB_017 IL_28026.3 | |
| IL_4V5B_271 | 1/DA/440:442, 1/DA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V5B_376 | 1/DA/440:454, 1/DA/479:497 | No text annotation | ||
| IL_4V5B_272 | 1/DA/446:454, 1/DA/479:488 | No text annotation | ||
| IL_4V5B_273 | 1/DA/454:455, 1/DA/477:479 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_4V5B_274 | 1/DA/457:459, 1/DA/472:475 | No text annotation | geometric IL_7KJT_002 IL_99358.1 | |
| IL_4V5B_275 | 1/DA/504:511, 1/DA/540:541 | No text annotation | ||
| IL_4V5B_448 | 1/DA/504:513, 1/DA/538:541 | No text annotation | ||
| IL_4V5B_276 | 1/DA/515:521, 1/DA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V5B_277 | 1/DA/569:575, 1/DA/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_4V5B_278 | 1/DA/594:596, 1/DA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V5B_279 | 1/DA/597:599, 1/DA/639:643 | No text annotation | geometric IL_4WF9_114 NA | |
| IL_4V5B_280 | 1/DA/605:612, 1/DA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V5B_281 | 1/DA/654:656, 1/DA/750:754 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
| IL_4V5B_380 | 1/DA/654:657, 1/DA/749:754 | No text annotation | ||
| IL_4V5B_381 | 1/DA/658:659, 1/DA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V5B_283 | 1/DA/662:666, 1/DA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4V5B_284 | 1/DA/773:779, 1/DA/803:806 | No text annotation | ||
| IL_4V5B_449 | 1/DA/774:783, 1/DA/799:805 | No text annotation | ||
| IL_4V5B_285 | 1/DA/779:783, 1/DA/799:803 | No text annotation | ||
| IL_4V5B_450 | 1/DA/826:832, 1/DA/854:874 | No text annotation | ||
| IL_4V5B_286 | 1/DA/887:897, 1/DA/902:910 | No text annotation | ||
| IL_4V5B_451 | 1/DA/922:924, 1/DA/1392:1395 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_07785.1 | |
| IL_4V5B_288 | 1/DA/925:927, 1/DA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4V5B_452 | 1/DA/933:935, 1/DA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V5B_453 | 1/DA/953:955, 1/DA/1225:1228 | No text annotation | ||
| IL_4V5B_454 | 1/DA/955:984, 1/DA/1221:1225 | No text annotation | ||
| IL_4V5B_386 | 1/DA/993:999, 1/DA/1041:1045 | No text annotation | ||
| IL_4V5B_292 | 1/DA/1003:1006, 1/DA/1023:1037 | No text annotation | ||
| IL_4V5B_293 | 1/DA/1047:1050, 1/DA/1208:1210 | Isolated non-canonical cWW pair | geometric IL_7A0S_031 IL_87907.2 | |
| IL_4V5B_387 | 1/DA/1052:1056, 1/DA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V5B_295 | 1/DA/1057:1058, 1/DA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4V5B_455 | 1/DA/1060:1061, 1/DA/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.6 | |
| IL_4V5B_297 | 1/DA/1061:1063, 1/DA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_4V5B_388 | 1/DA/1120:1129, 1/DA/1143:1153 | No text annotation | ||
| IL_4V5B_298 | 1/DA/1124:1128, 1/DA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V5B_299 | 1/DA/1129:1133, 1/DA/1141:1143 | No text annotation | homologous IL_4LFB_066 NA | |
| IL_4V5B_456 | 1/DA/1158:1161, 1/DA/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4V5B_301 | 1/DA/1247:1253, 1/DA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V5B_302 | 1/DA/1255:1258, 1/DA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V5B_303 | 1/DA/1259:1263, 1/DA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V5B_304 | 1/DA/1399:1401, 1/DA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V5B_389 | 1/DA/1399:1404, 1/DA/1497:1504 | No text annotation | ||
| IL_4V5B_305 | 1/DA/1401:1404, 1/DA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V5B_457 | 1/DA/1404:1409, 1/DA/1491:1497 | No text annotation | ||
| IL_4V5B_306 | 1/DA/1405:1412, 1/DA/1488:1496 | No text annotation | ||
| IL_4V5B_307 | 1/DA/1412:1414, 1/DA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_4V5B_308 | 1/DA/1416:1419, 1/DA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V5B_392 | 1/DA/1427:1435, 1/DA/1466:1473 | No text annotation | ||
| IL_4V5B_309 | 1/DA/1429:1435, 1/DA/1466:1471 | No text annotation | ||
| IL_4V5B_458 | 1/DA/1437:1442, 1/DA/1460:1464 | No text annotation | ||
| IL_4V5B_310 | 1/DA/1439:1442, 1/DA/1460:1462 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_51387.2 | |
| IL_4V5B_311 | 1/DA/1445:1448, 1/DA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V5B_312 | Minor groove platform with extra cWW | ||
| IL_4V5B_313 | No text annotation | ||
| IL_4V5B_011 | No text annotation | ||
| IL_4V5B_012 | Triple sheared | ||
| IL_4V5B_315 | Major groove platform with extra cWW | ||
| IL_4V5B_316 | No text annotation | ||
| IL_4V5B_317 | No text annotation | ||
| IL_4V5B_029 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_030 | Isolated non-canonical cWW pair | ||
| IL_4V5B_037 | No text annotation | ||
| IL_4V5B_319 | No text annotation | ||
| IL_4V5B_320 | No text annotation | ||
| IL_4V5B_041 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_042 | No text annotation | ||
| IL_4V5B_050 | No text annotation | ||
| IL_4V5B_051 | No text annotation | ||
| IL_4V5B_053 | No text annotation | ||
| IL_4V5B_322 | No text annotation | ||
| IL_4V5B_054 | No text annotation | ||
| IL_4V5B_323 | No text annotation | ||
| IL_4V5B_325 | No text annotation | ||
| IL_4V5B_065 | Isolated non-canonical cWW pair | ||
| IL_4V5B_328 | No text annotation | ||
| IL_4V5B_329 | No text annotation | ||
| IL_4V5B_074 | Isolated non-canonical cWW pair | ||
| IL_4V5B_079 | No text annotation | ||
| IL_4V5B_084 | No text annotation | ||
| IL_4V5B_091 | No text annotation | ||
| IL_4V5B_094 | No text annotation | ||
| IL_4V5B_333 | Isolated non-canonical cWW pair | ||
| IL_4V5B_101 | Isolated non-canonical cWW contact | ||
| IL_4V5B_104 | No text annotation | ||
| IL_4V5B_335 | No text annotation | ||
| IL_4V5B_336 | No text annotation | ||
| IL_4V5B_107 | No text annotation | ||
| IL_4V5B_109 | No text annotation | ||
| IL_4V5B_115 | No text annotation | ||
| IL_4V5B_116 | No text annotation | ||
| IL_4V5B_117 | No text annotation | ||
| IL_4V5B_119 | No text annotation | ||
| IL_4V5B_120 | No text annotation | ||
| IL_4V5B_338 | No text annotation | ||
| IL_4V5B_129 | No text annotation | ||
| IL_4V5B_340 | No text annotation | ||
| IL_4V5B_130 | No text annotation | ||
| IL_4V5B_341 | No text annotation | ||
| IL_4V5B_132 | Other IL | ||
| IL_4V5B_342 | No text annotation | ||
| IL_4V5B_136 | Isolated non-canonical cWW pair | ||
| IL_4V5B_344 | No text annotation | ||
| IL_4V5B_142 | No text annotation | ||
| IL_4V5B_145 | No text annotation | ||
| IL_4V5B_346 | No text annotation | ||
| IL_4V5B_151 | No text annotation | ||
| IL_4V5B_155 | No text annotation | ||
| IL_4V5B_349 | No text annotation | ||
| IL_4V5B_156 | No text annotation | ||
| IL_4V5B_350 | No text annotation | ||
| IL_4V5B_351 | No text annotation | ||
| IL_4V5B_352 | Minor groove platform with extra cWW | ||
| IL_4V5B_163 | No text annotation | ||
| IL_4V5B_354 | No text annotation | ||
| IL_4V5B_166 | No text annotation | ||
| IL_4V5B_167 | No text annotation | ||
| IL_4V5B_355 | No text annotation | ||
| IL_4V5B_357 | No text annotation | ||
| IL_4V5B_184 | Isolated non-canonical cWW with bulges | ||
| IL_4V5B_358 | No text annotation | ||
| IL_4V5B_192 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_193 | No text annotation | ||
| IL_4V5B_201 | No text annotation | ||
| IL_4V5B_202 | No text annotation | ||
| IL_4V5B_204 | No text annotation | ||
| IL_4V5B_361 | No text annotation | ||
| IL_4V5B_205 | No text annotation | ||
| IL_4V5B_362 | No text annotation | ||
| IL_4V5B_364 | No text annotation | ||
| IL_4V5B_216 | Isolated non-canonical cWW pair | ||
| IL_4V5B_367 | No text annotation | ||
| IL_4V5B_368 | No text annotation | ||
| IL_4V5B_225 | Isolated non-canonical cWW pair | ||
| IL_4V5B_230 | No text annotation | ||
| IL_4V5B_235 | No text annotation | ||
| IL_4V5B_245 | No text annotation | ||
| IL_4V5B_371 | Isolated non-canonical cWW pair | ||
| IL_4V5B_372 | No text annotation | ||
| IL_4V5B_254 | No text annotation | ||
| IL_4V5B_373 | No text annotation | ||
| IL_4V5B_374 | No text annotation | ||
| IL_4V5B_257 | No text annotation | ||
| IL_4V5B_259 | No text annotation | ||
| IL_4V5B_265 | No text annotation | ||
| IL_4V5B_266 | No text annotation | ||
| IL_4V5B_269 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_377 | No text annotation | ||
| IL_4V5B_378 | No text annotation | ||
| IL_4V5B_379 | No text annotation | ||
| IL_4V5B_282 | No text annotation | ||
| IL_4V5B_382 | No text annotation | ||
| IL_4V5B_383 | No text annotation | ||
| IL_4V5B_384 | No text annotation | ||
| IL_4V5B_287 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_289 | No text annotation | ||
| IL_4V5B_385 | No text annotation | ||
| IL_4V5B_290 | No text annotation | ||
| IL_4V5B_291 | No text annotation | ||
| IL_4V5B_294 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_296 | Tandem non-canonical cWW pairs | ||
| IL_4V5B_300 | No text annotation | ||
| IL_4V5B_390 | No text annotation | ||
| IL_4V5B_391 | No text annotation | ||
| IL_4V5B_393 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V5B_001 | 1/AA/10:16, 1/AA/68:70, 1/AA/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_4V5B_088 | 1/AA/10:16, 1/AA/68:79, 1/AA/97:110 | No text annotation | ||
| J3_4V5B_040 | 1/AB/24:31, 1/AB/474:481, 1/AB/509:516 | No text annotation | ||
| J3_4V5B_041 | 1/AB/24:31, 1/AB/474:484, 1/AB/496:516 | No text annotation | ||
| J3_4V5B_042 | 1/AB/32:35, 1/AB/445:461, 1/AB/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V5B_089 | 1/AB/56:57, 1/AB/70:76, 1/AB/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V5B_044 | 1/AB/297:301, 1/AB/316:317, 1/AB/334:341 | No text annotation | ||
| J3_4V5B_003 | 1/AB/683:690, 1/AB/772:775, 1/AB/791:794 | No text annotation | ||
| J3_4V5B_090 | 1/AB/683:689, 1/AB/773:777, 1/AB/787:794 | No text annotation | ||
| J3_4V5B_004 | 1/AB/698:700, 1/AB/732:736, 1/AB/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V5B_005 | 1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V5B_006 | 1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V5B_047 | 1/AB/1344:1361, 1/AB/1370:1385, 1/AB/1402:1403 | No text annotation | ||
| J3_4V5B_048 | 1/AB/1424:1429, 1/AB/1564:1565, 1/AB/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V5B_007 | 1/AB/2091:2093, 1/AB/2196:2201, 1/AB/2222:2228 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_4V5B_091 | 1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4V5B_092 | 1/AB/2515:2520, 1/AB/2545:2548, 1/AB/2560:2569 | No text annotation | ||
| J3_4V5B_009 | 1/AB/2517:2520, 1/AB/2545:2548, 1/AB/2560:2567 | No text annotation | geometric J3_4V9F_009 J3_69441.1 | |
| J3_4V5B_010 | 1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4V5B_011 | 1/AB/2812:2815, 1/AB/2831:2836, 1/AB/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4V5B_012 | 1/BA/46:47, 1/BA/361:369, 1/BA/392:395 | No text annotation | ||
| J3_4V5B_093 | 1/BA/46:52, 1/BA/359:369, 1/BA/392:395 | No text annotation | ||
| J3_4V5B_052 | 1/BA/580:588, 1/BA/651:654, 1/BA/754:761 | No text annotation | ||
| J3_4V5B_053 | 1/BA/580:588, 1/BA/651:655, 1/BA/751:761 | No text annotation | ||
| J3_4V5B_013 | 1/BA/584:588, 1/BA/651:654, 1/BA/754:757 | No text annotation | ||
| J3_4V5B_014 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4V5B_015 | 1/BA/826:830, 1/BA/856:861, 1/BA/868:874 | No text annotation | ||
| J3_4V5B_094 | 1/BA/826:833, 1/BA/853:861, 1/BA/868:874 | No text annotation | ||
| J3_4V5B_095 | 1/BA/933:939, 1/BA/1344:1350, 1/BA/1372:1384 | No text annotation | ||
| J3_4V5B_016 | 1/BA/941:949, 1/BA/1232:1237, 1/BA/1337:1342 | No text annotation | ||
| J3_4V5B_017 | 1/BA/952:963, 1/BA/972:984, 1/BA/1221:1229 | No text annotation | ||
| J3_4V5B_018 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_4V5B_056 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_4V5B_096 | 1/BA/1003:1008, 1/BA/1021:1027, 1/BA/1034:1037 | No text annotation | ||
| J3_4V5B_058 | 1/BA/1060:1068, 1/BA/1107:1113, 1/BA/1187:1197 | No text annotation | ||
| J3_4V5B_097 | 1/BA/1073:1075, 1/BA/1082:1087, 1/BA/1098:1102 | No text annotation | ||
| J3_4V5B_098 | 1/BA/1116:1118, 1/BA/1155:1158, 1/BA/1181:1184 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_4V5B_099 | 1/BA/1116:1118, 1/BA/1155:1162, 1/BA/1174:1184 | No text annotation | ||
| J3_4V5B_021 | 1/BA/1237:1242, 1/BA/1295:1303, 1/BA/1334:1337 | No text annotation | ||
| J3_4V5B_100 | 1/CA/10:16, 1/CA/68:79, 1/CA/97:110 | No text annotation | ||
| J3_4V5B_062 | 1/CB/24:31, 1/CB/474:481, 1/CB/509:516 | No text annotation | ||
| J3_4V5B_063 | 1/CB/24:31, 1/CB/474:484, 1/CB/496:516 | No text annotation | ||
| J3_4V5B_064 | 1/CB/32:35, 1/CB/445:461, 1/CB/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V5B_022 | 1/CB/55:57, 1/CB/70:75, 1/CB/112:115 | No text annotation | ||
| J3_4V5B_101 | 1/CB/56:57, 1/CB/70:76, 1/CB/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V5B_110 | 1/CB/297:302, 1/CB/315:325, 1/CB/337:341 | No text annotation | ||
| J3_4V5B_023 | 1/CB/683:690, 1/CB/772:775, 1/CB/791:794 | No text annotation | ||
| J3_4V5B_102 | 1/CB/683:689, 1/CB/773:777, 1/CB/787:794 | No text annotation | ||
| J3_4V5B_103 | 1/CB/697:700, 1/CB/732:736, 1/CB/760:765 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_4V5B_024 | 1/CB/698:700, 1/CB/732:736, 1/CB/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V5B_025 | 1/CB/1055:1062, 1/CB/1076:1090, 1/CB/1101:1104 | No text annotation | ||
| J3_4V5B_026 | 1/CB/1298:1303, 1/CB/1625:1627, 1/CB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V5B_027 | 1/CB/1306:1309, 1/CB/1605:1611, 1/CB/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V5B_070 | 1/CB/1344:1361, 1/CB/1370:1385, 1/CB/1402:1403 | No text annotation | ||
| J3_4V5B_071 | 1/CB/1424:1429, 1/CB/1564:1565, 1/CB/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V5B_028 | 1/CB/2091:2093, 1/CB/2196:2201, 1/CB/2222:2228 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_4V5B_072 | 1/CB/2091:2093, 1/CB/2196:2204, 1/CB/2220:2228 | No text annotation | ||
| J3_4V5B_104 | 1/CB/2295:2299, 1/CB/2317:2323, 1/CB/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4V5B_105 | 1/CB/2515:2520, 1/CB/2545:2548, 1/CB/2560:2569 | No text annotation | ||
| J3_4V5B_030 | 1/CB/2517:2520, 1/CB/2545:2549, 1/CB/2559:2567 | No text annotation | ||
| J3_4V5B_031 | 1/CB/2789:2791, 1/CB/2805:2806, 1/CB/2892:2894 | No text annotation | geometric J3_5J7L_047 J3_30104.1 | |
| J3_4V5B_032 | 1/CB/2812:2815, 1/CB/2831:2836, 1/CB/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4V5B_075 | 1/DA/46:47, 1/DA/361:369, 1/DA/392:395 | No text annotation | ||
| J3_4V5B_076 | 1/DA/46:52, 1/DA/359:369, 1/DA/392:395 | No text annotation | ||
| J3_4V5B_077 | 1/DA/580:590, 1/DA/649:654, 1/DA/754:761 | No text annotation | ||
| J3_4V5B_078 | 1/DA/580:590, 1/DA/649:657, 1/DA/749:761 | No text annotation | ||
| J3_4V5B_106 | 1/DA/672:678, 1/DA/712:725, 1/DA/732:734 | No text annotation | ||
| J3_4V5B_034 | 1/DA/936:940, 1/DA/1343:1350, 1/DA/1372:1379 | No text annotation | ||
| J3_4V5B_081 | 1/DA/989:993, 1/DA/1045:1047, 1/DA/1210:1216 | No text annotation | ||
| J3_4V5B_082 | 1/DA/989:999, 1/DA/1041:1047, 1/DA/1210:1216 | No text annotation | ||
| J3_4V5B_035 | 1/DA/990:993, 1/DA/1045:1047, 1/DA/1210:1215 | No text annotation | ||
| J3_4V5B_107 | 1/DA/1003:1006, 1/DA/1023:1027, 1/DA/1034:1037 | No text annotation | ||
| J3_4V5B_084 | 1/DA/1061:1068, 1/DA/1107:1113, 1/DA/1187:1195 | No text annotation | ||
| J3_4V5B_036 | 1/DA/1063:1068, 1/DA/1107:1113, 1/DA/1187:1193 | No text annotation | geometric J3_5J7L_008 J3_08394.3 | |
| J3_4V5B_037 | 1/DA/1073:1074, 1/DA/1083:1087, 1/DA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V5B_085 | 1/DA/1073:1075, 1/DA/1082:1087, 1/DA/1098:1102 | No text annotation | ||
| J3_4V5B_108 | 1/DA/1116:1119, 1/DA/1154:1158, 1/DA/1181:1184 | No text annotation | ||
| J3_4V5B_109 | 1/DA/1116:1119, 1/DA/1154:1161, 1/DA/1175:1184 | No text annotation | ||
| J4_4V5B_026 | 1/AB/268:272, 1/AB/365:375, 1/AB/399:406, 1/AB/421:424 | No text annotation | ||
| J4_4V5B_027 | 1/AB/601:604, 1/AB/624:628, 1/AB/635:638, 1/AB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V5B_028 | 1/AB/1270:1276, 1/AB/1294:1295, 1/AB/1645:1648, 1/AB/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4V5B_029 | 1/AB/1310:1314, 1/AB/1338:1343, 1/AB/1404:1405, 1/AB/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4V5B_030 | 1/AB/1313:1314, 1/AB/1338:1343, 1/AB/1404:1405, 1/AB/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4V5B_006 | 1/AB/1444:1445, 1/AB/1466:1467, 1/AB/1525:1526, 1/AB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V5B_031 | 1/AB/1674:1682, 1/AB/1706:1707, 1/AB/1751:1765, 1/AB/1987:1990 | No text annotation | ||
| J4_4V5B_008 | 1/AB/1772:1776, 1/AB/1788:1792, 1/AB/1827:1830, 1/AB/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.5 | |
| J4_4V5B_009 | 1/AB/1833:1835, 1/AB/1905:1906, 1/AB/1924:1945, 1/AB/1961:1972 | No text annotation | ||
| J4_4V5B_032 | 1/AB/2643:2646, 1/AB/2674:2676, 1/AB/2731:2735, 1/AB/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_4V5B_033 | 1/BA/142:144, 1/BA/178:184, 1/BA/193:198, 1/BA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4V5B_034 | 1/BA/941:948, 1/BA/1233:1241, 1/BA/1296:1303, 1/BA/1334:1342 | No text annotation | ||
| J4_4V5B_035 | 1/CB/268:269, 1/CB/370:375, 1/CB/399:406, 1/CB/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_4V5B_036 | 1/CB/601:604, 1/CB/624:628, 1/CB/635:638, 1/CB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V5B_037 | 1/CB/1270:1276, 1/CB/1294:1295, 1/CB/1645:1648, 1/CB/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4V5B_038 | 1/CB/1310:1314, 1/CB/1338:1343, 1/CB/1404:1405, 1/CB/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4V5B_039 | 1/CB/1313:1314, 1/CB/1338:1343, 1/CB/1404:1405, 1/CB/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4V5B_018 | 1/CB/1444:1445, 1/CB/1466:1467, 1/CB/1525:1526, 1/CB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V5B_040 | 1/CB/1674:1682, 1/CB/1706:1707, 1/CB/1751:1765, 1/CB/1987:1990 | No text annotation | ||
| J4_4V5B_020 | 1/CB/1772:1776, 1/CB/1788:1792, 1/CB/1827:1830, 1/CB/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.5 | |
| J4_4V5B_021 | 1/CB/1833:1835, 1/CB/1905:1906, 1/CB/1924:1945, 1/CB/1961:1972 | No text annotation | ||
| J4_4V5B_041 | 1/CB/2643:2646, 1/CB/2674:2676, 1/CB/2731:2742, 1/CB/2762:2771 | No text annotation | ||
| J4_4V5B_042 | 1/DA/142:144, 1/DA/178:184, 1/DA/193:198, 1/DA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4V5B_043 | 1/DA/569:577, 1/DA/764:769, 1/DA/810:821, 1/DA/879:881 | No text annotation | ||
| J4_4V5B_044 | 1/DA/942:946, 1/DA/1235:1241, 1/DA/1296:1308, 1/DA/1329:1341 | No text annotation | ||
| J5_4V5B_011 | 1/AB/47:54, 1/AB/116:121, 1/AB/130:133, 1/AB/146:150, 1/AB/176:178 | No text annotation | ||
| J5_4V5B_012 | 1/AB/584:589, 1/AB/668:678, 1/AB/799:812, 1/AB/1195:1196, 1/AB/1250:1256 | No text annotation | ||
| J5_4V5B_003 | 1/AB/2057:2064, 1/AB/2446:2455, 1/AB/2496:2507, 1/AB/2582:2588, 1/AB/2606:2611 | No text annotation | ||
| J5_4V5B_013 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:440, 1/BA/497:500, 1/BA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4V5B_005 | 1/CB/47:54, 1/CB/116:121, 1/CB/130:131, 1/CB/148:150, 1/CB/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V5B_014 | 1/CB/531:533, 1/CB/560:566, 1/CB/575:579, 1/CB/1261:1269, 1/CB/2011:2018 | No text annotation | ||
| J5_4V5B_015 | 1/CB/584:589, 1/CB/668:678, 1/CB/799:812, 1/CB/1195:1196, 1/CB/1250:1256 | No text annotation | ||
| J5_4V5B_008 | 1/CB/2057:2064, 1/CB/2446:2455, 1/CB/2496:2507, 1/CB/2582:2588, 1/CB/2606:2611 | No text annotation | ||
| J5_4V5B_009 | 1/DA/36:39, 1/DA/403:406, 1/DA/436:440, 1/DA/497:500, 1/DA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4V5B_010 | 1/DA/36:39, 1/DA/403:406, 1/DA/436:454, 1/DA/479:500, 1/DA/545:548 | No text annotation | ||
| J6_4V5B_005 | 1/AB/45:46, 1/AB/179:183, 1/AB/214:224, 1/AB/231:235, 1/AB/262:266, 1/AB/426:433 | No text annotation | ||
| J6_4V5B_002 | 1/AB/817:822, 1/AB/835:838, 1/AB/940:946, 1/AB/971:991, 1/AB/1163:1164, 1/AB/1185:1190 | No text annotation | ||
| J6_4V5B_006 | 1/BA/817:821, 1/BA/879:896, 1/BA/903:921, 1/BA/1396:1401, 1/BA/1501:1508, 1/BA/1527:1529 | No text annotation | ||
| J6_4V5B_007 | 1/CB/45:46, 1/CB/179:183, 1/CB/214:224, 1/CB/231:235, 1/CB/262:266, 1/CB/426:433 | No text annotation | ||
| J7_4V5B_005 | 1/BA/58:61, 1/BA/106:123, 1/BA/238:240, 1/BA/286:289, 1/BA/311:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | ||
| J7_4V5B_002 | 1/CB/8:15, 1/CB/525:531, 1/CB/2018:2023, 1/CB/2040:2043, 1/CB/2625:2630, 1/CB/2788:2789, 1/CB/2894:2895 | No text annotation | ||
| J7_4V5B_003 | 1/CB/817:822, 1/CB/835:838, 1/CB/940:946, 1/CB/971:976, 1/CB/987:991, 1/CB/1163:1164, 1/CB/1185:1190 | No text annotation | ||
| J7_4V5B_006 | 1/DA/58:61, 1/DA/106:123, 1/DA/238:240, 1/DA/286:289, 1/DA/311:316, 1/DA/337:339, 1/DA/350:354 | No text annotation | ||
| J8_4V5B_003 | 1/AB/2074:2077, 1/AB/2243:2246, 1/AB/2258:2259, 1/AB/2281:2289, 1/AB/2343:2347, 1/AB/2370:2373, 1/AB/2380:2395, 1/AB/2421:2435 | No text annotation | ||
| J8_4V5B_004 | 1/CB/2074:2077, 1/CB/2243:2246, 1/CB/2258:2259, 1/CB/2281:2289, 1/CB/2343:2347, 1/CB/2370:2373, 1/CB/2380:2395, 1/CB/2421:2435 | No text annotation | ||
| J11_4V5B_002 | 1/AB/8:15, 1/AB/525:533, 1/AB/560:564, 1/AB/577:579, 1/AB/1261:1269, 1/AB/2011:2023, 1/AB/2040:2043, 1/AB/2625:2630, 1/AB/2788:2791, 1/AB/2805:2806, 1/AB/2892:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V5B_039 | No text annotation | ||
| J3_4V5B_002 | No text annotation | ||
| J3_4V5B_043 | No text annotation | ||
| J3_4V5B_045 | No text annotation | ||
| J3_4V5B_046 | No text annotation | ||
| J3_4V5B_008 | No text annotation | ||
| J3_4V5B_049 | No text annotation | ||
| J3_4V5B_050 | No text annotation | ||
| J3_4V5B_051 | No text annotation | ||
| J3_4V5B_054 | No text annotation | ||
| J3_4V5B_055 | No text annotation | ||
| J3_4V5B_057 | No text annotation | ||
| J3_4V5B_019 | No text annotation | ||
| J3_4V5B_059 | No text annotation | ||
| J3_4V5B_060 | No text annotation | ||
| J3_4V5B_020 | No text annotation | ||
| J3_4V5B_061 | No text annotation | ||
| J3_4V5B_065 | No text annotation | ||
| J3_4V5B_066 | No text annotation | ||
| J3_4V5B_067 | No text annotation | ||
| J3_4V5B_068 | No text annotation | ||
| J3_4V5B_069 | No text annotation | ||
| J3_4V5B_029 | No text annotation | ||
| J3_4V5B_073 | No text annotation | ||
| J3_4V5B_074 | No text annotation | ||
| J3_4V5B_033 | No text annotation | ||
| J3_4V5B_079 | No text annotation | ||
| J3_4V5B_080 | No text annotation | ||
| J3_4V5B_083 | No text annotation | ||
| J3_4V5B_086 | No text annotation | ||
| J3_4V5B_087 | No text annotation | ||
| J3_4V5B_038 | No text annotation | ||
| J4_4V5B_001 | No text annotation | ||
| J4_4V5B_002 | No text annotation | ||
| J4_4V5B_003 | No text annotation | ||
| J4_4V5B_004 | No text annotation | ||
| J4_4V5B_005 | No text annotation | ||
| J4_4V5B_007 | No text annotation | ||
| J4_4V5B_010 | No text annotation | ||
| J4_4V5B_011 | No text annotation | ||
| J4_4V5B_012 | No text annotation | ||
| J4_4V5B_013 | No text annotation | ||
| J4_4V5B_014 | No text annotation | ||
| J4_4V5B_015 | No text annotation | ||
| J4_4V5B_016 | No text annotation | ||
| J4_4V5B_017 | No text annotation | ||
| J4_4V5B_019 | No text annotation | ||
| J4_4V5B_022 | No text annotation | ||
| J4_4V5B_023 | No text annotation | ||
| J4_4V5B_024 | No text annotation | ||
| J4_4V5B_025 | No text annotation | ||
| J5_4V5B_001 | No text annotation | ||
| J5_4V5B_002 | No text annotation | ||
| J5_4V5B_004 | No text annotation | ||
| J5_4V5B_006 | No text annotation | ||
| J5_4V5B_007 | No text annotation | ||
| J6_4V5B_001 | No text annotation | ||
| J6_4V5B_003 | No text annotation | ||
| J6_4V5B_004 | No text annotation | ||
| J7_4V5B_001 | No text annotation | ||
| J7_4V5B_004 | No text annotation | ||
| J8_4V5B_001 | No text annotation | ||
| J8_4V5B_002 | No text annotation | ||
| J11_4V5B_001 | No text annotation |
Coloring options: