RNA 3D Hub //

4V5B Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V5B_2001/AA/30:54No text annotation
HL_4V5B_0011/AA/33:49No text annotation
HL_4V5B_2011/AA/85:91No text annotation
HL_4V5B_0021/AA/86:90No text annotation
geometric
HL_5TBW_006
NA
HL_4V5B_0031/AB/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_4V5B_2021/AB/86:96No text annotation
homologous
HL_7A0S_002
HL_50418.1
HL_4V5B_2471/AB/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_4V5B_0061/AB/137:142No text annotation
geometric
HL_4V88_198
NA
HL_4V5B_0071/AB/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_4V5B_0081/AB/188:208No text annotation
HL_4V5B_0091/AB/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_4V5B_0101/AB/239:258No text annotation
HL_4V5B_0111/AB/305:312T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_01609.3
HL_4V5B_2031/AB/318:333No text annotation
homologous
HL_4WF9_011
HL_75660.5
HL_4V5B_0121/AB/319:323No text annotation
homologous
HL_9DFE_010
HL_75660.5
HL_4V5B_0131/AB/327:335T-loop with unstacked turn
homologous
HL_4WF9_012
HL_27670.2
HL_4V5B_0141/AB/381:393No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_4V5B_0151/AB/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_4V5B_0161/AB/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_4V5B_0171/AB/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_4V5B_0181/AB/543:550No text annotation
geometric
HL_3SKI_003
HL_14333.1
HL_4V5B_0191/AB/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.9
HL_4V5B_2061/AB/604:624No text annotation
HL_4V5B_0201/AB/611:617No text annotation
geometric
HL_6DTD_001
HL_48417.6
HL_4V5B_0211/AB/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_4V5B_0221/AB/641:647GNRA
homologous
HL_4WF9_021
HL_37824.8
HL_4V5B_0231/AB/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_4V5B_0241/AB/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_4V5B_2481/AB/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V5B_0261/AB/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_4V5B_0281/AB/955:962GNRA
homologous
HL_4WF9_027
HL_37824.8
HL_4V5B_0291/AB/977:986No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_4V5B_0301/AB/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_4V5B_0311/AB/1171:1178No text annotation
geometric
HL_5TBW_015
NA
HL_4V5B_0321/AB/1221:1228No text annotation
geometric
HL_5TBW_006
NA
HL_4V5B_0331/AB/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_4V5B_0341/AB/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_4V5B_0351/AB/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_4V5B_0361/AB/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_4V5B_0371/AB/1449:1462No text annotation
geometric
HL_8KAH_003
NA
HL_4V5B_0381/AB/1492:1498No text annotation
homologous
HL_7RQB_038
NA
HL_4V5B_0391/AB/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_4V5B_0401/AB/1565:1568Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_4V5B_0411/AB/1612:1619No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_4V5B_0421/AB/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_4V5B_0431/AB/1691:1696UNCG
geometric
HL_4JF2_003
HL_34617.5
HL_4V5B_2071/AB/1727:1733No text annotation
homologous
HL_5J7L_214
HL_08100.1
HL_4V5B_0441/AB/1728:1731No text annotation
HL_4V5B_0451/AB/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4V5B_2081/AB/1798:1821No text annotation
HL_4V5B_0461/AB/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_4V5B_0471/AB/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_4V5B_0481/AB/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V5B_2491/AB/1949:1957No text annotation
homologous
HL_4WF9_046
HL_20167.2
HL_4V5B_0501/AB/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_4V5B_0511/AB/2142:2149No text annotation
homologous
HL_5J7L_184
NA
HL_4V5B_0521/AB/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_4V5B_0531/AB/2248:2256No text annotation
homologous
HL_4WF9_049
HL_85367.2
HL_4V5B_0541/AB/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_4V5B_2501/AB/2304:2312No text annotation
HL_4V5B_0561/AB/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V5B_0571/AB/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_4V5B_0581/AB/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_4V5B_2511/AB/2401:2415No text annotation
HL_4V5B_0591/AB/2403:2414tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3
HL_4V5B_0601/AB/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_4V5B_2521/AB/2528:2535No text annotation
homologous
HL_7A0S_060
HL_31585.4
HL_4V5B_0621/AB/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V5B_0631/AB/2594:2599GNRA
homologous
HL_4WF9_059
HL_37824.8
HL_4V5B_2111/AB/2652:2668No text annotation
HL_4V5B_0641/AB/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.8
HL_4V5B_0651/AB/2700:2707No text annotation
HL_4V5B_0661/AB/2745:2759No text annotation
homologous
HL_4WF9_062
HL_74055.2
HL_4V5B_2531/AB/2796:2800Mini UNCG
geometric
HL_4V9F_021
HL_48778.2
HL_4V5B_0681/AB/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_4V5B_0691/AB/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.8
HL_4V5B_0701/BA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V5B_0711/BA/83:86No text annotation
HL_4V5B_2541/BA/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_4V5B_0731/BA/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_4V5B_2151/BA/203:214No text annotation
HL_4V5B_0741/BA/207:212UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_4V5B_0751/BA/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_4V5B_0761/BA/296:301GNRA
homologous
HL_6CZR_078
NA
HL_4V5B_0771/BA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V5B_0781/BA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V5B_0791/BA/377:386No text annotation
HL_4V5B_0801/BA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V5B_0811/BA/459:473No text annotation
HL_4V5B_0821/BA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_4V5B_0831/BA/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_4V5B_0841/BA/684:706No text annotation
HL_4V5B_0851/BA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.8
HL_4V5B_2171/BA/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V5B_0871/BA/840:846No text annotation
geometric
HL_4WF9_009
HL_81100.2
HL_4V5B_0881/BA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.8
HL_4V5B_2551/BA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_4V5B_0901/BA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V5B_0911/BA/1012:1017GNRA
geometric
HL_4V88_210
NA
HL_4V5B_0921/BA/1027:1034No text annotation
homologous
HL_6CZR_094
NA
HL_4V5B_2561/BA/1075:1082No text annotation
HL_4V5B_0931/BA/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_4V5B_0941/BA/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_4V5B_0951/BA/1164:1172tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3
HL_4V5B_2571/BA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_4V5B_0971/BA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_4V5B_0981/BA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V5B_2191/BA/1440:1461No text annotation
HL_4V5B_0991/BA/1444:1458No text annotation
HL_4V5B_1001/BA/1512:1523No text annotation
HL_4V5B_2211/CA/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_4V5B_1011/CA/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_4V5B_2221/CA/85:91No text annotation
HL_4V5B_1021/CA/86:90No text annotation
geometric
HL_5TBW_006
NA
HL_4V5B_1031/CB/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_4V5B_1041/CB/85:97No text annotation
geometric
HL_8KAH_003
NA
HL_4V5B_1051/CB/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_4V5B_1061/CB/134:145No text annotation
HL_4V5B_1071/CB/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_4V5B_1081/CB/188:208No text annotation
HL_4V5B_1091/CB/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_4V5B_1101/CB/239:258No text annotation
HL_4V5B_1111/CB/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_01609.3
HL_4V5B_1121/CB/327:335T-loop with unstacked turn
homologous
HL_7A0S_012
HL_27670.2
HL_4V5B_1131/CB/381:393No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_4V5B_1141/CB/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_4V5B_1151/CB/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_4V5B_1161/CB/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_4V5B_1171/CB/541:552No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_4V5B_1181/CB/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.9
HL_4V5B_2251/CB/604:624No text annotation
HL_4V5B_1191/CB/611:617No text annotation
geometric
HL_6DTD_001
HL_48417.6
HL_4V5B_1201/CB/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_4V5B_1211/CB/641:647GNRA
homologous
HL_4WF9_021
HL_37824.8
HL_4V5B_1221/CB/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_4V5B_1231/CB/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_4V5B_2581/CB/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V5B_1251/CB/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_4V5B_1271/CB/955:962GNRA
homologous
HL_4WF9_027
HL_37824.8
HL_4V5B_1281/CB/977:986No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_4V5B_1291/CB/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_4V5B_1301/CB/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_4V5B_1311/CB/1171:1178No text annotation
geometric
HL_5TBW_015
NA
HL_4V5B_1321/CB/1221:1228No text annotation
geometric
HL_5TBW_006
NA
HL_4V5B_1331/CB/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_4V5B_1341/CB/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_4V5B_1351/CB/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_4V5B_1361/CB/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_4V5B_1371/CB/1449:1462No text annotation
geometric
HL_8KAH_003
NA
HL_4V5B_1381/CB/1492:1498No text annotation
homologous
HL_7RQB_038
NA
HL_4V5B_1391/CB/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_4V5B_1401/CB/1565:1568Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_4V5B_1411/CB/1612:1619No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_4V5B_1421/CB/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_4V5B_1431/CB/1691:1696UNCG
geometric
HL_4JF2_003
HL_34617.5
HL_4V5B_2261/CB/1727:1733No text annotation
homologous
HL_5J7L_214
HL_08100.1
HL_4V5B_1441/CB/1728:1731No text annotation
HL_4V5B_1451/CB/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4V5B_2271/CB/1798:1821No text annotation
HL_4V5B_1461/CB/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_4V5B_1471/CB/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_4V5B_1481/CB/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V5B_2591/CB/1949:1957No text annotation
homologous
HL_4WF9_046
HL_20167.2
HL_4V5B_1501/CB/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_4V5B_1511/CB/2141:2150No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_4V5B_1521/CB/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_4V5B_1531/CB/2248:2256No text annotation
homologous
HL_4WF9_049
HL_85367.2
HL_4V5B_1541/CB/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_4V5B_2601/CB/2304:2312No text annotation
HL_4V5B_1561/CB/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V5B_1571/CB/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_4V5B_1581/CB/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_4V5B_2611/CB/2401:2415No text annotation
HL_4V5B_1591/CB/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_4V5B_1601/CB/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_4V5B_2621/CB/2528:2535No text annotation
homologous
HL_7A0S_060
HL_31585.4
HL_4V5B_1621/CB/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V5B_1631/CB/2594:2599GNRA
homologous
HL_4WF9_059
HL_37824.8
HL_4V5B_2301/CB/2652:2668No text annotation
HL_4V5B_1641/CB/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.8
HL_4V5B_1651/CB/2700:2707Externally structured
geometric
HL_5TBW_022
NA
HL_4V5B_1661/CB/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_4V5B_2631/CB/2796:2800Mini UNCG
geometric
HL_4V9F_021
HL_48778.2
HL_4V5B_1681/CB/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_4V5B_1691/CB/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.8
HL_4V5B_1701/DA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V5B_1711/DA/83:86No text annotation
HL_4V5B_2641/DA/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_4V5B_1731/DA/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_4V5B_2331/DA/203:214No text annotation
HL_4V5B_1741/DA/207:212UNCG
geometric
HL_5J7L_030
HL_34617.5
HL_4V5B_1751/DA/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_4V5B_1761/DA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.8
HL_4V5B_1771/DA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V5B_1781/DA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V5B_2351/DA/375:389No text annotation
geometric
HL_5TBW_226
NA
HL_4V5B_1791/DA/377:386No text annotation
HL_4V5B_1801/DA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V5B_2361/DA/454:479No text annotation
HL_4V5B_1811/DA/459:472No text annotation
HL_4V5B_1821/DA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_4V5B_2371/DA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V5B_1841/DA/683:707No text annotation
HL_4V5B_1851/DA/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_4V5B_2651/DA/784:798No text annotation
HL_4V5B_1861/DA/785:797No text annotation
HL_4V5B_1871/DA/840:846No text annotation
geometric
HL_5TBW_044
NA
HL_4V5B_1881/DA/861:868GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_4V5B_2411/DA/887:910No text annotation
HL_4V5B_1891/DA/897:902GNRA
geometric
HL_4V9F_048
HL_37824.8
HL_4V5B_1901/DA/1009:1020No text annotation
homologous
HL_5J7L_216
HL_78284.1
HL_4V5B_2421/DA/1027:1034tRNA D-loop
geometric
HL_2AZX_004
HL_20811.4
HL_4V5B_1911/DA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_4V5B_1921/DA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V5B_1931/DA/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_4V5B_2661/DA/1163:1173No text annotation
HL_4V5B_1941/DA/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_4V5B_1951/DA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_4V5B_2451/DA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_4V5B_1971/DA/1356:1366No text annotation
homologous
HL_5J7L_029
HL_06226.4
HL_4V5B_2461/DA/1445:1457No text annotation
HL_4V5B_1981/DA/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V5B_1991/DA/1515:1520GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_4V5B_004No text annotation
HL_4V5B_005No text annotation
HL_4V5B_204tRNA anticodon loop
HL_4V5B_205No text annotation
HL_4V5B_025No text annotation
HL_4V5B_027No text annotation
HL_4V5B_049No text annotation
HL_4V5B_209No text annotation
HL_4V5B_055No text annotation
HL_4V5B_210No text annotation
HL_4V5B_061No text annotation
HL_4V5B_212No text annotation
HL_4V5B_067Other HL
HL_4V5B_213No text annotation
HL_4V5B_214No text annotation
HL_4V5B_072No text annotation
HL_4V5B_216Anticodon loop related
HL_4V5B_086No text annotation
HL_4V5B_089GNRA with extra cWW
HL_4V5B_218No text annotation
HL_4V5B_096tRNA anticodon loop
HL_4V5B_220No text annotation
HL_4V5B_223No text annotation
HL_4V5B_224tRNA anticodon loop
HL_4V5B_124No text annotation
HL_4V5B_126No text annotation
HL_4V5B_149No text annotation
HL_4V5B_228No text annotation
HL_4V5B_155No text annotation
HL_4V5B_229No text annotation
HL_4V5B_161No text annotation
HL_4V5B_167Other HL
HL_4V5B_231No text annotation
HL_4V5B_232No text annotation
HL_4V5B_172No text annotation
HL_4V5B_234Anticodon loop related
HL_4V5B_183No text annotation
HL_4V5B_238No text annotation
HL_4V5B_239No text annotation
HL_4V5B_240No text annotation
HL_4V5B_243No text annotation
HL_4V5B_244No text annotation
HL_4V5B_196No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V5B_0011/AA/17:18,
1/AA/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_4V5B_0021/AA/23:28,
1/AA/56:60		No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_4V5B_0031/AA/30:33,
1/AA/49:54		No text annotation
homologous
IL_7A0S_104
IL_05192.5
IL_4V5B_0041/AA/71:79,
1/AA/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_4V5B_0051/AB/24:30,
1/AB/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_4V5B_0061/AB/36:37,
1/AB/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.7
IL_4V5B_0071/AB/43:44,
1/AB/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_4V5B_0081/AB/81:85,
1/AB/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_4V5B_0091/AB/183:184,
1/AB/212:214		Single stack bend
homologous
IL_7A0S_005
IL_90729.1
IL_4V5B_0101/AB/274:281,
1/AB/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_4V5B_3941/AB/293:295,
1/AB/343:347		No text annotation
homologous
IL_4WF9_014
IL_69440.3
IL_4V5B_3141/AB/481:484,
1/AB/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_4V5B_3951/AB/536:539,
1/AB/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_4V5B_0131/AB/564:566,
1/AB/575:577		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_4V5B_0141/AB/605:611,
1/AB/617:623		No text annotation
IL_4V5B_0151/AB/672:674,
1/AB/806:808		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_4V5B_0161/AB/674:678,
1/AB/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
IL_54041.2
IL_4V5B_0171/AB/697:698,
1/AB/763:765		Single bulged A
geometric
IL_7RQB_019
NA
IL_4V5B_0181/AB/702:703,
1/AB/728:730		Single bulged G
geometric
IL_4WF9_023
IL_00225.14
IL_4V5B_0191/AB/703:707,
1/AB/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_4V5B_0201/AB/738:740,
1/AB/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_4V5B_0211/AB/775:777,
1/AB/787:791		Multiple bulged bases
geometric
IL_4WF9_027
IL_06549.2
IL_4V5B_0221/AB/837:838,
1/AB/940:942		Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_4V5B_0231/AB/844:848,
1/AB/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_4V5B_0241/AB/850:851,
1/AB/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_4V5B_3961/AB/853:862,
1/AB/915:924		No text annotation
IL_4V5B_0251/AB/855:857,
1/AB/921:922		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_4V5B_0261/AB/857:862,
1/AB/915:921		No text annotation
IL_4V5B_0271/AB/862:863,
1/AB/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_4V5B_3971/AB/862:868,
1/AB/909:915		No text annotation
IL_4V5B_0281/AB/863:869,
1/AB/908:913		No text annotation
IL_4V5B_3181/AB/870:872,
1/AB/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_4V5B_3981/AB/994:996,
1/AB/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_4V5B_0311/AB/998:1002,
1/AB/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_38507.2
IL_4V5B_0321/AB/1004:1011,
1/AB/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_4V5B_0331/AB/1011:1013,
1/AB/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_4V5B_0341/AB/1018:1024,
1/AB/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V5B_0351/AB/1024:1030,
1/AB/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_4V5B_0361/AB/1031:1034,
1/AB/1121:1123		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_57744.1
IL_4V5B_3991/AB/1038:1041,
1/AB/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4V5B_0381/AB/1043:1053,
1/AB/1106:1112		No text annotation
IL_4V5B_0391/AB/1055:1057,
1/AB/1081:1104		No text annotation
IL_4V5B_0401/AB/1059:1062,
1/AB/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_4V5B_4001/AB/1196:1198,
1/AB/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_4V5B_4011/AB/1201:1206,
1/AB/1240:1244		No text annotation
IL_4V5B_0431/AB/1208:1215,
1/AB/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4V5B_0441/AB/1310:1313,
1/AB/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V5B_0451/AB/1319:1323,
1/AB/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_4V5B_0461/AB/1351:1356,
1/AB/1375:1380		No text annotation
IL_4V5B_0471/AB/1357:1361,
1/AB/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_4V5B_0481/AB/1415:1416,
1/AB/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_4V5B_0491/AB/1417:1421,
1/AB/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4V5B_3211/AB/1417:1423,
1/AB/1575:1581		No text annotation
IL_4V5B_4021/AB/1432:1435,
1/AB/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_4V5B_4031/AB/1437:1440,
1/AB/1551:1555		tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_4V5B_0521/AB/1468:1471,
1/AB/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_4V5B_4041/AB/1474:1478,
1/AB/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_4V5B_4051/AB/1481:1482,
1/AB/1507:1510		No text annotation
IL_4V5B_0551/AB/1489:1491,
1/AB/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_4V5B_0561/AB/1526:1529,
1/AB/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_4V5B_0571/AB/1651:1656,
1/AB/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_4V5B_0581/AB/1663:1665,
1/AB/1995:1997		Isolated tWW turn
geometric
IL_5J7L_305
IL_67095.2
IL_4V5B_0591/AB/1666:1669,
1/AB/1993:1994		Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_50694.7
IL_4V5B_3241/AB/1666:1674,
1/AB/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_4V5B_0601/AB/1669:1674,
1/AB/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
IL_76758.2
IL_4V5B_0611/AB/1686:1691,
1/AB/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_4V5B_0621/AB/1712:1718,
1/AB/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_4V5B_0631/AB/1720:1726,
1/AB/1734:1740		No text annotation
IL_4V5B_0641/AB/1727:1728,
1/AB/1731:1733		Single bulged C
homologous
IL_5J7L_311
IL_61258.15
IL_4V5B_3261/AB/1770:1771,
1/AB/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.7
IL_4V5B_0661/AB/1798:1804,
1/AB/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_4V5B_0671/AB/1837:1840,
1/AB/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_4V5B_3271/AB/1837:1842,
1/AB/1898:1903		No text annotation
IL_4V5B_0681/AB/1841:1842,
1/AB/1898:1901		Major groove intercalation
homologous
IL_4WF9_071
IL_82107.5
IL_4V5B_0691/AB/1846:1849,
1/AB/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V5B_4061/AB/1851:1860,
1/AB/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_4V5B_0701/AB/1864:1867,
1/AB/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_4V5B_0711/AB/1933:1945,
1/AB/1961:1967		No text annotation
IL_4V5B_0721/AB/2050:2052,
1/AB/2617:2618		Major groove platform
homologous
IL_4WF9_078
IL_48076.6
IL_4V5B_0731/AB/2054:2056,
1/AB/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_4V5B_4071/AB/2067:2069,
1/AB/2442:2443		Single bulged U
homologous
IL_9DFE_080
IL_89505.4
IL_4V5B_0751/AB/2070:2071,
1/AB/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V5B_0761/AB/2081:2083,
1/AB/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_4V5B_0771/AB/2085:2087,
1/AB/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4V5B_0781/AB/2103:2106,
1/AB/2183:2186		No text annotation
IL_4V5B_3301/AB/2103:2107,
1/AB/2182:2186		No text annotation
IL_4V5B_0801/AB/2201:2204,
1/AB/2220:2222		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V5B_0811/AB/2350:2353,
1/AB/2364:2367		Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_4V5B_0821/AB/2401:2403,
1/AB/2414:2415		No text annotation
IL_4V5B_0831/AB/2456:2459,
1/AB/2493:2495		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_57744.1
IL_4V5B_3311/AB/2459:2461,
1/AB/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.3
IL_4V5B_0851/AB/2466:2470,
1/AB/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_4V5B_0861/AB/2507:2508,
1/AB/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_4V5B_0871/AB/2510:2512,
1/AB/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4V5B_0881/AB/2512:2513,
1/AB/2571:2574		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_4V5B_0891/AB/2522:2523,
1/AB/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_4V5B_0901/AB/2591:2592,
1/AB/2601:2603		Single bulged A
homologous
IL_5J7L_344
IL_31462.7
IL_4V5B_3321/AB/2636:2640,
1/AB/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_4V5B_0921/AB/2652:2658,
1/AB/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4V5B_0931/AB/2680:2684,
1/AB/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_4V5B_4081/AB/2687:2692,
1/AB/2717:2722		No text annotation
IL_4V5B_0951/AB/2694:2696,
1/AB/2711:2715		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_4V5B_0961/AB/2737:2744,
1/AB/2760:2767		No text annotation
IL_4V5B_0971/AB/2806:2811,
1/AB/2889:2892		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_4V5B_0981/AB/2838:2839,
1/AB/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_4V5B_0991/AB/2843:2846,
1/AB/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_4V5B_1001/AB/2847:2852,
1/AB/2865:2869		No text annotation
homologous
IL_7A0S_101
IL_70411.2
IL_4V5B_3341/BA/30:32,
1/BA/552:553		Single bulged G
homologous
IL_6CZR_113
NA
IL_4V5B_1021/BA/44:45,
1/BA/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.7
IL_4V5B_1031/BA/47:52,
1/BA/359:361		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_4V5B_4091/BA/53:56,
1/BA/356:358		No text annotation
IL_4V5B_1051/BA/63:66,
1/BA/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_4V5B_1061/BA/67:69,
1/BA/99:102		Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_4V5B_4101/BA/70:73,
1/BA/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_4V5B_1081/BA/75:76,
1/BA/93:95		Single bulged G
homologous
IL_5J7L_395
IL_00225.14
IL_4V5B_4111/BA/128:131,
1/BA/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_4V5B_1101/BA/132:136,
1/BA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V5B_1111/BA/144:146,
1/BA/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_4V5B_1121/BA/147:153,
1/BA/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_4V5B_1131/BA/203:207,
1/BA/212:214		No text annotation
homologous
IL_5J7L_013
IL_66997.2
IL_4V5B_1141/BA/242:247,
1/BA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V5B_4121/BA/249:252,
1/BA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V5B_4131/BA/292:293,
1/BA/304:308		C-loop
homologous
IL_5J7L_016
IL_03109.3
IL_4V5B_4141/BA/371:375,
1/BA/389:390		C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_4V5B_1181/BA/375:377,
1/BA/386:389		Decoding loop related
geometric
IL_5Z1I_003
NA
IL_4V5B_4151/BA/408:416,
1/BA/427:434		No text annotation
IL_4V5B_3371/BA/440:442,
1/BA/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_4V5B_4161/BA/445:455,
1/BA/477:489		No text annotation
IL_4V5B_1211/BA/504:511,
1/BA/540:541		SSU/LSU pseudoknot
homologous
IL_6CZR_132
NA
IL_4V5B_1221/BA/515:521,
1/BA/528:536		Kink-turn related
homologous
IL_5J7L_025
IL_54177.4
IL_4V5B_1231/BA/567:575,
1/BA/880:883		Tandem non-canonical cWW pairs
geometric
IL_4EYA_008
IL_51479.1
IL_4V5B_1241/BA/580:584,
1/BA/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_4V5B_3391/BA/591:596,
1/BA/644:648		No text annotation
IL_4V5B_1251/BA/594:596,
1/BA/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_4V5B_1261/BA/597:598,
1/BA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_4V5B_1271/BA/605:612,
1/BA/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_4V5B_1281/BA/654:655,
1/BA/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_4V5B_4171/BA/658:659,
1/BA/746:748		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_4V5B_4181/BA/662:667,
1/BA/739:743		No text annotation
IL_4V5B_4191/BA/672:680,
1/BA/710:734		No text annotation
IL_4V5B_1311/BA/673:680,
1/BA/710:717		No text annotation
IL_4V5B_4201/BA/774:778,
1/BA/804:805		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_4V5B_1331/BA/779:783,
1/BA/799:803		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_4V5B_4211/BA/779:784,
1/BA/798:803		tSH-tHW-tHS-cWW
geometric
IL_3LQX_002
IL_76308.6
IL_4V5B_1341/BA/887:894,
1/BA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_4V5B_1351/BA/922:924,
1/BA/1392:1395		Isolated non-canonical cWW pair
geometric
IL_3TD0_002
IL_57744.1
IL_4V5B_4221/BA/925:927,
1/BA/1390:1391		Single bulged G
homologous
IL_5J7L_040
IL_00225.14
IL_4V5B_1371/BA/933:936,
1/BA/1379:1384		No text annotation
IL_4V5B_3431/BA/952:954,
1/BA/1226:1229		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_4V5B_4231/BA/955:984,
1/BA/1221:1225		No text annotation
IL_4V5B_1381/BA/993:997,
1/BA/1044:1045		Minor groove platform
homologous
IL_4LFB_039
IL_47078.3
IL_4V5B_1391/BA/997:1002,
1/BA/1038:1044		No text annotation
IL_4V5B_1401/BA/1048:1050,
1/BA/1208:1209		Single bulged U
geometric
IL_2PN3_003
IL_89505.4
IL_4V5B_3451/BA/1048:1056,
1/BA/1204:1209		No text annotation
IL_4V5B_1411/BA/1051:1056,
1/BA/1204:1207		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_4V5B_4241/BA/1057:1058,
1/BA/1199:1203		Minor groove platform
homologous
IL_6CZR_155
NA
IL_4V5B_1431/BA/1073:1087,
1/BA/1098:1102		No text annotation
IL_4V5B_1441/BA/1124:1128,
1/BA/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_4V5B_4251/BA/1129:1132,
1/BA/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_4V5B_1461/BA/1158:1162,
1/BA/1174:1181		No text annotation
IL_4V5B_1471/BA/1247:1253,
1/BA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_4V5B_1481/BA/1255:1258,
1/BA/1277:1282		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_4V5B_1491/BA/1259:1263,
1/BA/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_4V5B_1501/BA/1303:1309,
1/BA/1328:1334		No text annotation
IL_4V5B_3471/BA/1401:1404,
1/BA/1497:1501		No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_4V5B_1521/BA/1405:1407,
1/BA/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4V88_417
NA
IL_4V5B_1531/BA/1407:1409,
1/BA/1491:1494		No text annotation
geometric
IL_2A64_008
IL_55516.2
IL_4V5B_1541/BA/1410:1414,
1/BA/1486:1490		No text annotation
geometric
IL_5TBW_121
NA
IL_4V5B_3481/BA/1416:1421,
1/BA/1479:1484		No text annotation
IL_4V5B_4261/BA/1430:1436,
1/BA/1465:1470		No text annotation
IL_4V5B_1571/BA/1440:1444,
1/BA/1458:1461		No text annotation
IL_4V5B_1581/CA/17:18,
1/CA/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_4V5B_4271/CA/23:32,
1/CA/50:60		No text annotation
IL_4V5B_1591/CB/24:30,
1/CB/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_4V5B_1601/CB/36:37,
1/CB/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.7
IL_4V5B_1611/CB/43:44,
1/CB/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_4V5B_1621/CB/75:76,
1/CB/110:112		Single stack bend
geometric
IL_5TBW_009
NA
IL_4V5B_3531/CB/81:85,
1/CB/97:105		No text annotation
IL_4V5B_1641/CB/183:184,
1/CB/212:214		Single stack bend
homologous
IL_7A0S_005
IL_90729.1
IL_4V5B_1651/CB/269:272,
1/CB/365:370		No text annotation
IL_4V5B_4281/CB/274:281,
1/CB/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_4V5B_4291/CB/293:295,
1/CB/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_4V5B_3561/CB/481:484,
1/CB/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_4V5B_1681/CB/536:539,
1/CB/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_4V5B_1691/CB/605:611,
1/CB/617:623		No text annotation
IL_4V5B_1701/CB/672:674,
1/CB/806:808		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_87907.2
IL_4V5B_1711/CB/674:678,
1/CB/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_4V5B_1721/CB/697:698,
1/CB/763:765		Single bulged A
homologous
IL_7RQB_019
NA
IL_4V5B_1731/CB/702:703,
1/CB/728:730		Single bulged G
homologous
IL_4WF9_023
IL_00225.14
IL_4V5B_1741/CB/703:707,
1/CB/724:728		Triple sheared
geometric
IL_7RQB_021
NA
IL_4V5B_1751/CB/738:740,
1/CB/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_4V5B_1761/CB/775:777,
1/CB/787:791		Multiple bulged bases
geometric
IL_4WF9_027
IL_06549.2
IL_4V5B_1771/CB/837:838,
1/CB/940:942		Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_4V5B_1781/CB/844:848,
1/CB/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_4V5B_1791/CB/850:851,
1/CB/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_4V5B_4301/CB/853:863,
1/CB/913:924		No text annotation
IL_4V5B_1801/CB/855:857,
1/CB/921:922		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_4V5B_1811/CB/857:863,
1/CB/913:921		No text annotation
IL_4V5B_1821/CB/864:869,
1/CB/908:912		No text annotation
geometric
IL_4V9F_035
IL_06691.1
IL_4V5B_1831/CB/870:874,
1/CB/903:907		Partly complementary
geometric
IL_7VYX_004
IL_49751.4
IL_4V5B_4311/CB/994:996,
1/CB/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_4V5B_1851/CB/998:1002,
1/CB/1153:1157		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_4V5B_1861/CB/1004:1011,
1/CB/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_4V5B_1871/CB/1011:1013,
1/CB/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_4V5B_1881/CB/1018:1024,
1/CB/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V5B_1891/CB/1024:1034,
1/CB/1121:1140		No text annotation
IL_4V5B_4321/CB/1034:1041,
1/CB/1114:1121		No text annotation
IL_4V5B_1901/CB/1038:1041,
1/CB/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4V5B_1911/CB/1043:1053,
1/CB/1106:1112		No text annotation
IL_4V5B_3591/CB/1043:1090,
1/CB/1101:1112		No text annotation
IL_4V5B_4331/CB/1196:1198,
1/CB/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_4V5B_4341/CB/1201:1206,
1/CB/1240:1244		No text annotation
IL_4V5B_1941/CB/1208:1215,
1/CB/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4V5B_1951/CB/1310:1313,
1/CB/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V5B_1961/CB/1319:1323,
1/CB/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_4V5B_1971/CB/1351:1356,
1/CB/1375:1380		No text annotation
IL_4V5B_1981/CB/1357:1361,
1/CB/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_4V5B_1991/CB/1415:1416,
1/CB/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_4V5B_2001/CB/1417:1421,
1/CB/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4V5B_3601/CB/1417:1423,
1/CB/1575:1581		No text annotation
IL_4V5B_4351/CB/1432:1435,
1/CB/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_4V5B_4361/CB/1437:1440,
1/CB/1551:1555		tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_4V5B_2031/CB/1468:1471,
1/CB/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_4V5B_4371/CB/1474:1478,
1/CB/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_4V5B_4381/CB/1481:1482,
1/CB/1507:1510		No text annotation
IL_4V5B_2061/CB/1489:1491,
1/CB/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_4V5B_2071/CB/1526:1529,
1/CB/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_4V5B_2081/CB/1651:1656,
1/CB/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_4V5B_2091/CB/1663:1665,
1/CB/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_4V5B_2101/CB/1666:1669,
1/CB/1993:1994		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_4V5B_3631/CB/1666:1674,
1/CB/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_4V5B_2111/CB/1669:1674,
1/CB/1990:1993		Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_4V5B_2121/CB/1686:1691,
1/CB/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_4V5B_2131/CB/1712:1718,
1/CB/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_4V5B_2141/CB/1720:1726,
1/CB/1734:1740		No text annotation
IL_4V5B_2151/CB/1727:1728,
1/CB/1731:1733		Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_4V5B_3651/CB/1770:1771,
1/CB/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.7
IL_4V5B_2171/CB/1798:1804,
1/CB/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_4V5B_2181/CB/1837:1840,
1/CB/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_4V5B_3661/CB/1837:1842,
1/CB/1898:1903		No text annotation
IL_4V5B_2191/CB/1841:1842,
1/CB/1898:1901		Major groove intercalation
homologous
IL_4WF9_071
IL_82107.5
IL_4V5B_2201/CB/1846:1849,
1/CB/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V5B_4391/CB/1851:1860,
1/CB/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_4V5B_2211/CB/1864:1867,
1/CB/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_4V5B_2221/CB/1933:1945,
1/CB/1961:1967		No text annotation
IL_4V5B_2231/CB/2050:2052,
1/CB/2617:2618		Major groove platform
homologous
IL_4WF9_078
IL_48076.6
IL_4V5B_2241/CB/2054:2056,
1/CB/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_4V5B_4401/CB/2067:2069,
1/CB/2442:2443		Single bulged U
homologous
IL_9DFE_080
IL_89505.4
IL_4V5B_2261/CB/2070:2071,
1/CB/2438:2441		Minor groove platform
geometric
IL_7RQB_081
NA
IL_4V5B_2271/CB/2081:2083,
1/CB/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_4V5B_2281/CB/2085:2087,
1/CB/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4V5B_2291/CB/2103:2106,
1/CB/2183:2186		No text annotation
IL_4V5B_3691/CB/2103:2108,
1/CB/2181:2186		No text annotation
IL_4V5B_2311/CB/2201:2204,
1/CB/2220:2222		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V5B_2321/CB/2350:2353,
1/CB/2364:2367		Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_4V5B_2331/CB/2400:2403,
1/CB/2414:2416		Isolated non-canonical cWW pair
geometric
IL_4V88_507
NA
IL_4V5B_2341/CB/2456:2459,
1/CB/2493:2495		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_57744.1
IL_4V5B_3701/CB/2459:2461,
1/CB/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.3
IL_4V5B_2361/CB/2466:2470,
1/CB/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_4V5B_2371/CB/2507:2508,
1/CB/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_4V5B_2381/CB/2510:2512,
1/CB/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4V5B_2391/CB/2512:2513,
1/CB/2571:2574		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_4V5B_2401/CB/2522:2523,
1/CB/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_4V5B_2411/CB/2591:2592,
1/CB/2601:2603		Single bulged A
homologous
IL_5J7L_344
IL_31462.7
IL_4V5B_2421/CB/2636:2640,
1/CB/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_4V5B_2431/CB/2652:2658,
1/CB/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4V5B_2441/CB/2680:2684,
1/CB/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_4V5B_4411/CB/2687:2692,
1/CB/2717:2722		No text annotation
IL_4V5B_2461/CB/2694:2696,
1/CB/2711:2715		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_4V5B_2471/CB/2737:2742,
1/CB/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_4V5B_2481/CB/2806:2811,
1/CB/2889:2892		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_4V5B_2491/CB/2838:2839,
1/CB/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_4V5B_2501/CB/2843:2846,
1/CB/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_4V5B_2511/CB/2847:2852,
1/CB/2865:2869		No text annotation
homologous
IL_7A0S_101
IL_70411.2
IL_4V5B_2521/DA/30:32,
1/DA/552:553		Single bulged G
homologous
IL_6CZR_113
NA
IL_4V5B_4421/DA/42:45,
1/DA/396:400		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_4V5B_2531/DA/47:52,
1/DA/359:361		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_4V5B_4431/DA/53:56,
1/DA/356:358		No text annotation
IL_4V5B_2551/DA/63:66,
1/DA/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_4V5B_2561/DA/67:69,
1/DA/99:102		Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_4V5B_4441/DA/70:73,
1/DA/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_4V5B_2581/DA/75:76,
1/DA/93:95		Single bulged G
homologous
IL_5J7L_395
IL_00225.14
IL_4V5B_4451/DA/128:131,
1/DA/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_4V5B_2601/DA/132:136,
1/DA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V5B_2611/DA/144:146,
1/DA/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_4V5B_2621/DA/147:153,
1/DA/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_4V5B_2631/DA/203:207,
1/DA/212:214		No text annotation
homologous
IL_5J7L_013
IL_66997.2
IL_4V5B_2641/DA/242:247,
1/DA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V5B_4461/DA/249:252,
1/DA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V5B_4471/DA/292:293,
1/DA/304:308		C-loop
homologous
IL_5J7L_016
IL_03109.3
IL_4V5B_2671/DA/370:375,
1/DA/389:391		No text annotation
geometric
IL_4WF9_114
NA
IL_4V5B_2681/DA/375:377,
1/DA/386:389		Decoding loop related
geometric
IL_5Z1I_003
NA
IL_4V5B_3751/DA/406:416,
1/DA/427:436		No text annotation
IL_4V5B_2701/DA/409:416,
1/DA/427:433		No text annotation
geometric
IL_4LFB_017
IL_28026.3
IL_4V5B_2711/DA/440:442,
1/DA/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_4V5B_3761/DA/440:454,
1/DA/479:497		No text annotation
IL_4V5B_2721/DA/446:454,
1/DA/479:488		No text annotation
IL_4V5B_2731/DA/454:455,
1/DA/477:479		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_4V5B_2741/DA/457:459,
1/DA/472:475		No text annotation
geometric
IL_7KJT_002
IL_99358.1
IL_4V5B_2751/DA/504:511,
1/DA/540:541		No text annotation
IL_4V5B_4481/DA/504:513,
1/DA/538:541		No text annotation
IL_4V5B_2761/DA/515:521,
1/DA/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_4V5B_2771/DA/569:575,
1/DA/880:881		No text annotation
homologous
IL_6CZR_134
NA
IL_4V5B_2781/DA/594:596,
1/DA/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_4V5B_2791/DA/597:599,
1/DA/639:643		No text annotation
geometric
IL_4WF9_114
NA
IL_4V5B_2801/DA/605:612,
1/DA/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_4V5B_2811/DA/654:656,
1/DA/750:754		Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_4V5B_3801/DA/654:657,
1/DA/749:754		No text annotation
IL_4V5B_3811/DA/658:659,
1/DA/746:748		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_4V5B_2831/DA/662:666,
1/DA/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_4V5B_2841/DA/773:779,
1/DA/803:806		No text annotation
IL_4V5B_4491/DA/774:783,
1/DA/799:805		No text annotation
IL_4V5B_2851/DA/779:783,
1/DA/799:803		No text annotation
IL_4V5B_4501/DA/826:832,
1/DA/854:874		No text annotation
IL_4V5B_2861/DA/887:897,
1/DA/902:910		No text annotation
IL_4V5B_4511/DA/922:924,
1/DA/1392:1395		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_07785.1
IL_4V5B_2881/DA/925:927,
1/DA/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.14
IL_4V5B_4521/DA/933:935,
1/DA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V5B_4531/DA/953:955,
1/DA/1225:1228		No text annotation
IL_4V5B_4541/DA/955:984,
1/DA/1221:1225		No text annotation
IL_4V5B_3861/DA/993:999,
1/DA/1041:1045		No text annotation
IL_4V5B_2921/DA/1003:1006,
1/DA/1023:1037		No text annotation
IL_4V5B_2931/DA/1047:1050,
1/DA/1208:1210		Isolated non-canonical cWW pair
geometric
IL_7A0S_031
IL_87907.2
IL_4V5B_3871/DA/1052:1056,
1/DA/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V5B_2951/DA/1057:1058,
1/DA/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_4V5B_4551/DA/1060:1061,
1/DA/1195:1197		Single bulged A
homologous
IL_5J7L_049
IL_31462.7
IL_4V5B_2971/DA/1061:1063,
1/DA/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_4V5B_3881/DA/1120:1129,
1/DA/1143:1153		No text annotation
IL_4V5B_2981/DA/1124:1128,
1/DA/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_4V5B_2991/DA/1129:1133,
1/DA/1141:1143		No text annotation
homologous
IL_4LFB_066
NA
IL_4V5B_4561/DA/1158:1161,
1/DA/1175:1181		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_4V5B_3011/DA/1247:1253,
1/DA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_4V5B_3021/DA/1255:1258,
1/DA/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_4V5B_3031/DA/1259:1263,
1/DA/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_4V5B_3041/DA/1399:1401,
1/DA/1501:1504		No text annotation
geometric
IL_4V88_463
NA
IL_4V5B_3891/DA/1399:1404,
1/DA/1497:1504		No text annotation
IL_4V5B_3051/DA/1401:1404,
1/DA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4V5B_4571/DA/1404:1409,
1/DA/1491:1497		No text annotation
IL_4V5B_3061/DA/1405:1412,
1/DA/1488:1496		No text annotation
IL_4V5B_3071/DA/1412:1414,
1/DA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_4V5B_3081/DA/1416:1419,
1/DA/1481:1484		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V5B_3921/DA/1427:1435,
1/DA/1466:1473		No text annotation
IL_4V5B_3091/DA/1429:1435,
1/DA/1466:1471		No text annotation
IL_4V5B_4581/DA/1437:1442,
1/DA/1460:1464		No text annotation
IL_4V5B_3101/DA/1439:1442,
1/DA/1460:1462		Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_51387.3
IL_4V5B_3111/DA/1445:1448,
1/DA/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_4V5B_312Minor groove platform with extra cWW
IL_4V5B_313No text annotation
IL_4V5B_011No text annotation
IL_4V5B_012Triple sheared
IL_4V5B_315Major groove platform with extra cWW
IL_4V5B_316No text annotation
IL_4V5B_317No text annotation
IL_4V5B_029Tandem non-canonical cWW pairs
IL_4V5B_030Isolated non-canonical cWW pair
IL_4V5B_037No text annotation
IL_4V5B_319No text annotation
IL_4V5B_320No text annotation
IL_4V5B_041Tandem non-canonical cWW pairs
IL_4V5B_042No text annotation
IL_4V5B_050No text annotation
IL_4V5B_051No text annotation
IL_4V5B_053No text annotation
IL_4V5B_322No text annotation
IL_4V5B_054No text annotation
IL_4V5B_323No text annotation
IL_4V5B_325No text annotation
IL_4V5B_065Isolated non-canonical cWW pair
IL_4V5B_328No text annotation
IL_4V5B_329No text annotation
IL_4V5B_074Isolated non-canonical cWW pair
IL_4V5B_079No text annotation
IL_4V5B_084No text annotation
IL_4V5B_091No text annotation
IL_4V5B_094No text annotation
IL_4V5B_333Isolated non-canonical cWW pair
IL_4V5B_101Isolated non-canonical cWW contact
IL_4V5B_104No text annotation
IL_4V5B_335No text annotation
IL_4V5B_336No text annotation
IL_4V5B_107No text annotation
IL_4V5B_109No text annotation
IL_4V5B_115No text annotation
IL_4V5B_116No text annotation
IL_4V5B_117No text annotation
IL_4V5B_119No text annotation
IL_4V5B_120No text annotation
IL_4V5B_338No text annotation
IL_4V5B_129No text annotation
IL_4V5B_340No text annotation
IL_4V5B_130No text annotation
IL_4V5B_341No text annotation
IL_4V5B_132Other IL
IL_4V5B_342No text annotation
IL_4V5B_136Isolated non-canonical cWW pair
IL_4V5B_344No text annotation
IL_4V5B_142No text annotation
IL_4V5B_145No text annotation
IL_4V5B_346No text annotation
IL_4V5B_151No text annotation
IL_4V5B_155No text annotation
IL_4V5B_349No text annotation
IL_4V5B_156No text annotation
IL_4V5B_350No text annotation
IL_4V5B_351No text annotation
IL_4V5B_352Minor groove platform with extra cWW
IL_4V5B_163No text annotation
IL_4V5B_354No text annotation
IL_4V5B_166No text annotation
IL_4V5B_167No text annotation
IL_4V5B_355No text annotation
IL_4V5B_357No text annotation
IL_4V5B_184Isolated non-canonical cWW with bulges
IL_4V5B_358No text annotation
IL_4V5B_192Tandem non-canonical cWW pairs
IL_4V5B_193No text annotation
IL_4V5B_201No text annotation
IL_4V5B_202No text annotation
IL_4V5B_204No text annotation
IL_4V5B_361No text annotation
IL_4V5B_205No text annotation
IL_4V5B_362No text annotation
IL_4V5B_364No text annotation
IL_4V5B_216Isolated non-canonical cWW pair
IL_4V5B_367No text annotation
IL_4V5B_368No text annotation
IL_4V5B_225Isolated non-canonical cWW pair
IL_4V5B_230No text annotation
IL_4V5B_235No text annotation
IL_4V5B_245No text annotation
IL_4V5B_371Isolated non-canonical cWW pair
IL_4V5B_372No text annotation
IL_4V5B_254No text annotation
IL_4V5B_373No text annotation
IL_4V5B_374No text annotation
IL_4V5B_257No text annotation
IL_4V5B_259No text annotation
IL_4V5B_265No text annotation
IL_4V5B_266No text annotation
IL_4V5B_269Tandem non-canonical cWW pairs
IL_4V5B_377No text annotation
IL_4V5B_378No text annotation
IL_4V5B_379No text annotation
IL_4V5B_282No text annotation
IL_4V5B_382No text annotation
IL_4V5B_383No text annotation
IL_4V5B_384No text annotation
IL_4V5B_287Tandem non-canonical cWW pairs
IL_4V5B_289No text annotation
IL_4V5B_385No text annotation
IL_4V5B_290No text annotation
IL_4V5B_291No text annotation
IL_4V5B_294Tandem non-canonical cWW pairs
IL_4V5B_296Tandem non-canonical cWW pairs
IL_4V5B_300No text annotation
IL_4V5B_390No text annotation
IL_4V5B_391No text annotation
IL_4V5B_393No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V5B_0011/AA/10:16,
1/AA/68:70,
1/AA/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_4V5B_0881/AA/10:16,
1/AA/68:79,
1/AA/97:110		No text annotation
J3_4V5B_0401/AB/24:31,
1/AB/474:481,
1/AB/509:516		No text annotation
J3_4V5B_0411/AB/24:31,
1/AB/474:484,
1/AB/496:516		No text annotation
J3_4V5B_0421/AB/32:35,
1/AB/445:461,
1/AB/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_4V5B_0891/AB/56:57,
1/AB/70:76,
1/AB/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_4V5B_0441/AB/297:301,
1/AB/316:317,
1/AB/334:341		No text annotation
J3_4V5B_0031/AB/683:690,
1/AB/772:775,
1/AB/791:794		No text annotation
J3_4V5B_0901/AB/683:689,
1/AB/773:777,
1/AB/787:794		No text annotation
J3_4V5B_0041/AB/698:700,
1/AB/732:736,
1/AB/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4V5B_0051/AB/1298:1303,
1/AB/1625:1627,
1/AB/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_4V5B_0061/AB/1306:1309,
1/AB/1605:1611,
1/AB/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4V5B_0471/AB/1344:1361,
1/AB/1370:1385,
1/AB/1402:1403		No text annotation
J3_4V5B_0481/AB/1424:1429,
1/AB/1564:1565,
1/AB/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_4V5B_0071/AB/2091:2093,
1/AB/2196:2201,
1/AB/2222:2228		No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_4V5B_0911/AB/2295:2299,
1/AB/2317:2323,
1/AB/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_4V5B_0921/AB/2515:2520,
1/AB/2545:2548,
1/AB/2560:2569		No text annotation
J3_4V5B_0091/AB/2517:2520,
1/AB/2545:2548,
1/AB/2560:2567		No text annotation
geometric
J3_4V9F_009
J3_69441.1
J3_4V5B_0101/AB/2789:2791,
1/AB/2805:2806,
1/AB/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_4V5B_0111/AB/2812:2815,
1/AB/2831:2836,
1/AB/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_4V5B_0121/BA/46:47,
1/BA/361:369,
1/BA/392:395		No text annotation
J3_4V5B_0931/BA/46:52,
1/BA/359:369,
1/BA/392:395		No text annotation
J3_4V5B_0521/BA/580:588,
1/BA/651:654,
1/BA/754:761		No text annotation
J3_4V5B_0531/BA/580:588,
1/BA/651:655,
1/BA/751:761		No text annotation
J3_4V5B_0131/BA/584:588,
1/BA/651:654,
1/BA/754:757		No text annotation
J3_4V5B_0141/BA/672:673,
1/BA/717:725,
1/BA/732:734		No text annotation
homologous
J3_4LFB_012
J3_11934.4
J3_4V5B_0151/BA/826:830,
1/BA/856:861,
1/BA/868:874		No text annotation
J3_4V5B_0941/BA/826:833,
1/BA/853:861,
1/BA/868:874		No text annotation
J3_4V5B_0951/BA/933:939,
1/BA/1344:1350,
1/BA/1372:1384		No text annotation
J3_4V5B_0161/BA/941:949,
1/BA/1232:1237,
1/BA/1337:1342		No text annotation
J3_4V5B_0171/BA/952:963,
1/BA/972:984,
1/BA/1221:1229		No text annotation
J3_4V5B_0181/BA/990:993,
1/BA/1045:1047,
1/BA/1210:1215		No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_4V5B_0561/BA/990:997,
1/BA/1044:1047,
1/BA/1210:1215		No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_4V5B_0961/BA/1003:1008,
1/BA/1021:1027,
1/BA/1034:1037		No text annotation
J3_4V5B_0581/BA/1060:1068,
1/BA/1107:1113,
1/BA/1187:1197		No text annotation
J3_4V5B_0971/BA/1073:1075,
1/BA/1082:1087,
1/BA/1098:1102		No text annotation
J3_4V5B_0981/BA/1116:1118,
1/BA/1155:1158,
1/BA/1181:1184		No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_4V5B_0991/BA/1116:1118,
1/BA/1155:1162,
1/BA/1174:1184		No text annotation
J3_4V5B_0211/BA/1237:1242,
1/BA/1295:1303,
1/BA/1334:1337		No text annotation
J3_4V5B_1001/CA/10:16,
1/CA/68:79,
1/CA/97:110		No text annotation
J3_4V5B_0621/CB/24:31,
1/CB/474:481,
1/CB/509:516		No text annotation
J3_4V5B_0631/CB/24:31,
1/CB/474:484,
1/CB/496:516		No text annotation
J3_4V5B_0641/CB/32:35,
1/CB/445:461,
1/CB/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_4V5B_0221/CB/55:57,
1/CB/70:75,
1/CB/112:115		No text annotation
J3_4V5B_1011/CB/56:57,
1/CB/70:76,
1/CB/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_4V5B_1101/CB/297:302,
1/CB/315:325,
1/CB/337:341		No text annotation
J3_4V5B_0231/CB/683:690,
1/CB/772:775,
1/CB/791:794		No text annotation
J3_4V5B_1021/CB/683:689,
1/CB/773:777,
1/CB/787:794		No text annotation
J3_4V5B_1031/CB/697:700,
1/CB/732:736,
1/CB/760:765		No text annotation
geometric
J3_8P9A_050
J3_21998.1
J3_4V5B_0241/CB/698:700,
1/CB/732:736,
1/CB/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4V5B_0251/CB/1055:1062,
1/CB/1076:1090,
1/CB/1101:1104		No text annotation
J3_4V5B_0261/CB/1298:1303,
1/CB/1625:1627,
1/CB/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_4V5B_0271/CB/1306:1309,
1/CB/1605:1611,
1/CB/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4V5B_0701/CB/1344:1361,
1/CB/1370:1385,
1/CB/1402:1403		No text annotation
J3_4V5B_0711/CB/1424:1429,
1/CB/1564:1565,
1/CB/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_4V5B_0281/CB/2091:2093,
1/CB/2196:2201,
1/CB/2222:2228		No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_4V5B_0721/CB/2091:2093,
1/CB/2196:2204,
1/CB/2220:2228		No text annotation
J3_4V5B_1041/CB/2295:2299,
1/CB/2317:2323,
1/CB/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_4V5B_1051/CB/2515:2520,
1/CB/2545:2548,
1/CB/2560:2569		No text annotation
J3_4V5B_0301/CB/2517:2520,
1/CB/2545:2549,
1/CB/2559:2567		No text annotation
J3_4V5B_0311/CB/2789:2791,
1/CB/2805:2806,
1/CB/2892:2894		No text annotation
geometric
J3_5J7L_047
J3_30104.1
J3_4V5B_0321/CB/2812:2815,
1/CB/2831:2836,
1/CB/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_4V5B_0751/DA/46:47,
1/DA/361:369,
1/DA/392:395		No text annotation
J3_4V5B_0761/DA/46:52,
1/DA/359:369,
1/DA/392:395		No text annotation
J3_4V5B_0771/DA/580:590,
1/DA/649:654,
1/DA/754:761		No text annotation
J3_4V5B_0781/DA/580:590,
1/DA/649:657,
1/DA/749:761		No text annotation
J3_4V5B_1061/DA/672:678,
1/DA/712:725,
1/DA/732:734		No text annotation
J3_4V5B_0341/DA/936:940,
1/DA/1343:1350,
1/DA/1372:1379		No text annotation
J3_4V5B_0811/DA/989:993,
1/DA/1045:1047,
1/DA/1210:1216		No text annotation
J3_4V5B_0821/DA/989:999,
1/DA/1041:1047,
1/DA/1210:1216		No text annotation
J3_4V5B_0351/DA/990:993,
1/DA/1045:1047,
1/DA/1210:1215		No text annotation
J3_4V5B_1071/DA/1003:1006,
1/DA/1023:1027,
1/DA/1034:1037		No text annotation
J3_4V5B_0841/DA/1061:1068,
1/DA/1107:1113,
1/DA/1187:1195		No text annotation
J3_4V5B_0361/DA/1063:1068,
1/DA/1107:1113,
1/DA/1187:1193		No text annotation
geometric
J3_5J7L_008
J3_08394.3
J3_4V5B_0371/DA/1073:1074,
1/DA/1083:1087,
1/DA/1098:1102		No text annotation
homologous
J3_6CZR_024
NA
J3_4V5B_0851/DA/1073:1075,
1/DA/1082:1087,
1/DA/1098:1102		No text annotation
J3_4V5B_1081/DA/1116:1119,
1/DA/1154:1158,
1/DA/1181:1184		No text annotation
J3_4V5B_1091/DA/1116:1119,
1/DA/1154:1161,
1/DA/1175:1184		No text annotation
J4_4V5B_0261/AB/268:272,
1/AB/365:375,
1/AB/399:406,
1/AB/421:424		No text annotation
J4_4V5B_0271/AB/601:604,
1/AB/624:628,
1/AB/635:638,
1/AB/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_4V5B_0281/AB/1270:1276,
1/AB/1294:1295,
1/AB/1645:1648,
1/AB/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_4V5B_0291/AB/1310:1314,
1/AB/1338:1343,
1/AB/1404:1405,
1/AB/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_4V5B_0301/AB/1313:1314,
1/AB/1338:1343,
1/AB/1404:1405,
1/AB/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_4V5B_0061/AB/1444:1445,
1/AB/1466:1467,
1/AB/1525:1526,
1/AB/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_4V5B_0311/AB/1674:1682,
1/AB/1706:1707,
1/AB/1751:1765,
1/AB/1987:1990		No text annotation
J4_4V5B_0081/AB/1772:1776,
1/AB/1788:1792,
1/AB/1827:1830,
1/AB/1975:1979		No text annotation
homologous
J4_4WF9_007
J4_61477.5
J4_4V5B_0091/AB/1833:1835,
1/AB/1905:1906,
1/AB/1924:1945,
1/AB/1961:1972		No text annotation
J4_4V5B_0321/AB/2643:2646,
1/AB/2674:2676,
1/AB/2731:2735,
1/AB/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_4V5B_0331/BA/142:144,
1/BA/178:184,
1/BA/193:198,
1/BA/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_4V5B_0341/BA/941:948,
1/BA/1233:1241,
1/BA/1296:1303,
1/BA/1334:1342		No text annotation
J4_4V5B_0351/CB/268:269,
1/CB/370:375,
1/CB/399:406,
1/CB/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_4V5B_0361/CB/601:604,
1/CB/624:628,
1/CB/635:638,
1/CB/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_4V5B_0371/CB/1270:1276,
1/CB/1294:1295,
1/CB/1645:1648,
1/CB/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_4V5B_0381/CB/1310:1314,
1/CB/1338:1343,
1/CB/1404:1405,
1/CB/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_4V5B_0391/CB/1313:1314,
1/CB/1338:1343,
1/CB/1404:1405,
1/CB/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_4V5B_0181/CB/1444:1445,
1/CB/1466:1467,
1/CB/1525:1526,
1/CB/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_4V5B_0401/CB/1674:1682,
1/CB/1706:1707,
1/CB/1751:1765,
1/CB/1987:1990		No text annotation
J4_4V5B_0201/CB/1772:1776,
1/CB/1788:1792,
1/CB/1827:1830,
1/CB/1975:1979		No text annotation
homologous
J4_4WF9_007
J4_61477.5
J4_4V5B_0211/CB/1833:1835,
1/CB/1905:1906,
1/CB/1924:1945,
1/CB/1961:1972		No text annotation
J4_4V5B_0411/CB/2643:2646,
1/CB/2674:2676,
1/CB/2731:2742,
1/CB/2762:2771		No text annotation
J4_4V5B_0421/DA/142:144,
1/DA/178:184,
1/DA/193:198,
1/DA/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_4V5B_0431/DA/569:577,
1/DA/764:769,
1/DA/810:821,
1/DA/879:881		No text annotation
J4_4V5B_0441/DA/942:946,
1/DA/1235:1241,
1/DA/1296:1308,
1/DA/1329:1341		No text annotation
J5_4V5B_0111/AB/47:54,
1/AB/116:121,
1/AB/130:133,
1/AB/146:150,
1/AB/176:178		No text annotation
J5_4V5B_0121/AB/584:589,
1/AB/668:678,
1/AB/799:812,
1/AB/1195:1196,
1/AB/1250:1256		No text annotation
J5_4V5B_0031/AB/2057:2064,
1/AB/2446:2455,
1/AB/2496:2507,
1/AB/2582:2588,
1/AB/2606:2611		No text annotation
J5_4V5B_0131/BA/36:39,
1/BA/403:406,
1/BA/436:440,
1/BA/497:500,
1/BA/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_4V5B_0051/CB/47:54,
1/CB/116:121,
1/CB/130:131,
1/CB/148:150,
1/CB/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_4V5B_0141/CB/531:533,
1/CB/560:566,
1/CB/575:579,
1/CB/1261:1269,
1/CB/2011:2018		No text annotation
J5_4V5B_0151/CB/584:589,
1/CB/668:678,
1/CB/799:812,
1/CB/1195:1196,
1/CB/1250:1256		No text annotation
J5_4V5B_0081/CB/2057:2064,
1/CB/2446:2455,
1/CB/2496:2507,
1/CB/2582:2588,
1/CB/2606:2611		No text annotation
J5_4V5B_0091/DA/36:39,
1/DA/403:406,
1/DA/436:440,
1/DA/497:500,
1/DA/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_4V5B_0101/DA/36:39,
1/DA/403:406,
1/DA/436:454,
1/DA/479:500,
1/DA/545:548		No text annotation
J6_4V5B_0051/AB/45:46,
1/AB/179:183,
1/AB/214:224,
1/AB/231:235,
1/AB/262:266,
1/AB/426:433		No text annotation
J6_4V5B_0021/AB/817:822,
1/AB/835:838,
1/AB/940:946,
1/AB/971:991,
1/AB/1163:1164,
1/AB/1185:1190		No text annotation
J6_4V5B_0061/BA/817:821,
1/BA/879:896,
1/BA/903:921,
1/BA/1396:1401,
1/BA/1501:1508,
1/BA/1527:1529		No text annotation
J6_4V5B_0071/CB/45:46,
1/CB/179:183,
1/CB/214:224,
1/CB/231:235,
1/CB/262:266,
1/CB/426:433		No text annotation
J7_4V5B_0051/BA/58:61,
1/BA/106:123,
1/BA/238:240,
1/BA/286:289,
1/BA/311:316,
1/BA/337:339,
1/BA/350:354		No text annotation
J7_4V5B_0021/CB/8:15,
1/CB/525:531,
1/CB/2018:2023,
1/CB/2040:2043,
1/CB/2625:2630,
1/CB/2788:2789,
1/CB/2894:2895		No text annotation
J7_4V5B_0031/CB/817:822,
1/CB/835:838,
1/CB/940:946,
1/CB/971:976,
1/CB/987:991,
1/CB/1163:1164,
1/CB/1185:1190		No text annotation
J7_4V5B_0061/DA/58:61,
1/DA/106:123,
1/DA/238:240,
1/DA/286:289,
1/DA/311:316,
1/DA/337:339,
1/DA/350:354		No text annotation
J8_4V5B_0031/AB/2074:2077,
1/AB/2243:2246,
1/AB/2258:2259,
1/AB/2281:2289,
1/AB/2343:2347,
1/AB/2370:2373,
1/AB/2380:2395,
1/AB/2421:2435		No text annotation
J8_4V5B_0041/CB/2074:2077,
1/CB/2243:2246,
1/CB/2258:2259,
1/CB/2281:2289,
1/CB/2343:2347,
1/CB/2370:2373,
1/CB/2380:2395,
1/CB/2421:2435		No text annotation
J11_4V5B_0021/AB/8:15,
1/AB/525:533,
1/AB/560:564,
1/AB/577:579,
1/AB/1261:1269,
1/AB/2011:2023,
1/AB/2040:2043,
1/AB/2625:2630,
1/AB/2788:2791,
1/AB/2805:2806,
1/AB/2892:2895		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V5B_039No text annotation
J3_4V5B_002No text annotation
J3_4V5B_043No text annotation
J3_4V5B_045No text annotation
J3_4V5B_046No text annotation
J3_4V5B_008No text annotation
J3_4V5B_049No text annotation
J3_4V5B_050No text annotation
J3_4V5B_051No text annotation
J3_4V5B_054No text annotation
J3_4V5B_055No text annotation
J3_4V5B_057No text annotation
J3_4V5B_019No text annotation
J3_4V5B_059No text annotation
J3_4V5B_060No text annotation
J3_4V5B_020No text annotation
J3_4V5B_061No text annotation
J3_4V5B_065No text annotation
J3_4V5B_066No text annotation
J3_4V5B_067No text annotation
J3_4V5B_068No text annotation
J3_4V5B_069No text annotation
J3_4V5B_029No text annotation
J3_4V5B_073No text annotation
J3_4V5B_074No text annotation
J3_4V5B_033No text annotation
J3_4V5B_079No text annotation
J3_4V5B_080No text annotation
J3_4V5B_083No text annotation
J3_4V5B_086No text annotation
J3_4V5B_087No text annotation
J3_4V5B_038No text annotation
J4_4V5B_001No text annotation
J4_4V5B_002No text annotation
J4_4V5B_003No text annotation
J4_4V5B_004No text annotation
J4_4V5B_005No text annotation
J4_4V5B_007No text annotation
J4_4V5B_010No text annotation
J4_4V5B_011No text annotation
J4_4V5B_012No text annotation
J4_4V5B_013No text annotation
J4_4V5B_014No text annotation
J4_4V5B_015No text annotation
J4_4V5B_016No text annotation
J4_4V5B_017No text annotation
J4_4V5B_019No text annotation
J4_4V5B_022No text annotation
J4_4V5B_023No text annotation
J4_4V5B_024No text annotation
J4_4V5B_025No text annotation
J5_4V5B_001No text annotation
J5_4V5B_002No text annotation
J5_4V5B_004No text annotation
J5_4V5B_006No text annotation
J5_4V5B_007No text annotation
J6_4V5B_001No text annotation
J6_4V5B_003No text annotation
J6_4V5B_004No text annotation
J7_4V5B_001No text annotation
J7_4V5B_004No text annotation
J8_4V5B_001No text annotation
J8_4V5B_002No text annotation
J11_4V5B_001No text annotation

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