HL_4V5B_013
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 4V5B|1|AB|G|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5B_013 not in the Motif Atlas
- Homologous match to HL_4WF9_012
- Geometric discrepancy: 0.2921
- The information below is about HL_4WF9_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
4V5B|1|AB|G|327
4V5B|1|AB|U|328
4V5B|1|AB|G|329
4V5B|1|AB|A|330
4V5B|1|AB|C|331
4V5B|1|AB|A|332
4V5B|1|AB|G|333
4V5B|1|AB|C|334
4V5B|1|AB|C|335
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 50S RIBOSOMAL PROTEIN L4
- Chain AU
- 50S RIBOSOMAL PROTEIN L24
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