HL_4V5B_027

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGCAACAACCC

Length

11 nucleotides

Bulged bases

4V5B|1|AB|A|878

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_027 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3799

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|AB|G|874
4V5B|1|AB|G|875
4V5B|1|AB|C|876
4V5B|1|AB|A|877
4V5B|1|AB|A|878
4V5B|1|AB|C|898
4V5B|1|AB|A|899
4V5B|1|AB|A|900
4V5B|1|AB|C|901
4V5B|1|AB|C|902
4V5B|1|AB|C|903

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AM

50S RIBOSOMAL PROTEIN L16