HL_4V5B_034

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V5B|1|AB|U|1325, 4V5B|1|AB|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_034 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.3098

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V5B|1|AB|G|1324
4V5B|1|AB|U|1325
4V5B|1|AB|U|1326
4V5B|1|AB|A|1327
4V5B|1|AB|A|1328
4V5B|1|AB|U|1329
4V5B|1|AB|C|1330

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AN

50S RIBOSOMAL PROTEIN L17

Chain AS

50S RIBOSOMAL PROTEIN L22