HL_4V5B_050

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V5B|1|AB|A|2030, 4V5B|1|AB|A|2031, 4V5B|1|AB|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2367

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

4V5B|1|AB|G|2027
4V5B|1|AB|U|2028
4V5B|1|AB|G|2029
4V5B|1|AB|A|2030
4V5B|1|AB|A|2031
4V5B|1|AB|G|2032
4V5B|1|AB|A|2033
4V5B|1|AB|U|2034
4V5B|1|AB|G|2035
4V5B|1|AB|C|2036

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L32

Chain AD

50S RIBOSOMAL PROTEIN L3