HL_4V5B_059

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGAAUGGAAGG

Length

12 nucleotides

Bulged bases

4V5B|1|AB|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_059 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3663

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5B|1|AB|C|2403
4V5B|1|AB|U|2404
4V5B|1|AB|G|2405
4V5B|1|AB|A|2406
4V5B|1|AB|A|2407
4V5B|1|AB|U|2408
4V5B|1|AB|G|2409
4V5B|1|AB|G|2410
4V5B|1|AB|A|2411
4V5B|1|AB|A|2412
4V5B|1|AB|G|2413
4V5B|1|AB|G|2414

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AL

50S RIBOSOMAL PROTEIN L15