HL_4V5B_066

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V5B|1|AB|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.2028

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V5B|1|AB|C|2745
4V5B|1|AB|U|2746
4V5B|1|AB|G|2747
4V5B|1|AB|A|2748
4V5B|1|AB|A|2749
4V5B|1|AB|A|2750
4V5B|1|AB|G|2751
4V5B|1|AB|C|2752
4V5B|1|AB|A|2753
4V5B|1|AB|U|2754
4V5B|1|AB|C|2755
4V5B|1|AB|U|2756
4V5B|1|AB|A|2757
4V5B|1|AB|A|2758
4V5B|1|AB|G|2759

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A4

50S RIBOSOMAL PROTEIN L36

Chain AG

50S RIBOSOMAL PROTEIN L6