HL_4V5B_085

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_085 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.3147

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5B|1|BA|C|726
4V5B|1|BA|G|727
4V5B|1|BA|A|728
4V5B|1|BA|A|729
4V5B|1|BA|G|730
4V5B|1|BA|G|731

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BO

30S RIBOSOMAL PROTEIN S15

Chain BR

30S RIBOSOMAL PROTEIN S18

Chain BU

30S RIBOSOMAL PROTEIN S21