HL_4V5B_086

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAUUAGAUACCC

Length

13 nucleotides

Bulged bases

4V5B|1|BA|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|BA|G|785
4V5B|1|BA|G|786
4V5B|1|BA|A|787
4V5B|1|BA|U|788
4V5B|1|BA|U|789
4V5B|1|BA|A|790
4V5B|1|BA|G|791
4V5B|1|BA|A|792
4V5B|1|BA|U|793
4V5B|1|BA|A|794
4V5B|1|BA|C|795
4V5B|1|BA|C|796
4V5B|1|BA|C|797

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S RIBOSOMAL PROTEIN S11

Chain BU

30S RIBOSOMAL PROTEIN S21