HL_4V5B_087

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4V5B|1|BA|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_087 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3481

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V5B|1|BA|C|840
4V5B|1|BA|C|841
4V5B|1|BA|U|842
4V5B|1|BA|U|843
4V5B|1|BA|G|844
4V5B|1|BA|A|845
4V5B|1|BA|G|846

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BR

30S RIBOSOMAL PROTEIN S18

Chain DB

30S RIBOSOMAL PROTEIN S2