3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GUCCGGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5B_094 not in the Motif Atlas
Homologous match to HL_6CZR_097
Geometric discrepancy: 0.3279
The information below is about HL_6CZR_097
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5B|1|BA|G|1134
4V5B|1|BA|U|1135
4V5B|1|BA|C|1136
4V5B|1|BA|C|1137
4V5B|1|BA|G|1138
4V5B|1|BA|G|1139
4V5B|1|BA|C|1140

Current chains

Chain BA
16S RIBOSOMAL RNA

Nearby chains

Chain BI
30S RIBOSOMAL PROTEIN S9

Coloring options:


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