HL_4V5B_094

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_094 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3279

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|BA|G|1134
4V5B|1|BA|U|1135
4V5B|1|BA|C|1136
4V5B|1|BA|C|1137
4V5B|1|BA|G|1138
4V5B|1|BA|G|1139
4V5B|1|BA|C|1140

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BI

30S RIBOSOMAL PROTEIN S9