HL_4V5B_105

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4V5B|1|CB|A|125, 4V5B|1|CB|A|126, 4V5B|1|CB|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_105 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.3653

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5B|1|CB|G|123
4V5B|1|CB|G|124
4V5B|1|CB|A|125
4V5B|1|CB|A|126
4V5B|1|CB|A|127
4V5B|1|CB|C|128

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34

Chain CT

50S RIBOSOMAL PROTEIN L23