HL_4V5B_106

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGUUUCGACAC

Length

12 nucleotides

Bulged bases

4V5B|1|CB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|134
4V5B|1|CB|U|135
4V5B|1|CB|G|136
4V5B|1|CB|U|137
4V5B|1|CB|U|138
4V5B|1|CB|U|139
4V5B|1|CB|C|140
4V5B|1|CB|G|141
4V5B|1|CB|A|142
4V5B|1|CB|C|143
4V5B|1|CB|A|144
4V5B|1|CB|C|145

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CT

50S RIBOSOMAL PROTEIN L23