HL_4V5B_108

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAACUGAAACAUCUAAGUAC

Length

21 nucleotides

Bulged bases

4V5B|1|CB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|188
4V5B|1|CB|G|189
4V5B|1|CB|A|190
4V5B|1|CB|A|191
4V5B|1|CB|C|192
4V5B|1|CB|U|193
4V5B|1|CB|G|194
4V5B|1|CB|A|195
4V5B|1|CB|A|196
4V5B|1|CB|A|197
4V5B|1|CB|C|198
4V5B|1|CB|A|199
4V5B|1|CB|U|200
4V5B|1|CB|C|201
4V5B|1|CB|U|202
4V5B|1|CB|A|203
4V5B|1|CB|A|204
4V5B|1|CB|G|205
4V5B|1|CB|U|206
4V5B|1|CB|A|207
4V5B|1|CB|C|208

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C2

50S RIBOSOMAL PROTEIN L34

Chain CL

50S RIBOSOMAL PROTEIN L15

Chain CZ

50S RIBOSOMAL PROTEIN L31