HL_4V5B_117

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

ACGCUUAGGCGU

Length

12 nucleotides

Bulged bases

4V5B|1|CB|U|546, 4V5B|1|CB|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_117 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.257

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5B|1|CB|A|541
4V5B|1|CB|C|542
4V5B|1|CB|G|543
4V5B|1|CB|C|544
4V5B|1|CB|U|545
4V5B|1|CB|U|546
4V5B|1|CB|A|547
4V5B|1|CB|G|548
4V5B|1|CB|G|549
4V5B|1|CB|C|550
4V5B|1|CB|G|551
4V5B|1|CB|U|552

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CJ

50S RIBOSOMAL PROTEIN L13

Chain CQ

50S RIBOSOMAL PROTEIN L20

Chain CR

50S RIBOSOMAL PROTEIN L21