HL_4V5B_119

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4V5B|1|CB|A|613, 4V5B|1|CB|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_119 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3178

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V5B|1|CB|C|611
4V5B|1|CB|G|612
4V5B|1|CB|A|613
4V5B|1|CB|A|614
4V5B|1|CB|U|615
4V5B|1|CB|A|616
4V5B|1|CB|G|617

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CE

50S RIBOSOMAL PROTEIN L4